myRT

myRT report for GCA_003630525.1_ASM363052v1

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Seq: RACU01000191.1 (54984 bp)
Overview 1 RT 1: 48776-54981 bp Neighborhood of RT #1 [48776, 54983] COG0610 DUF45 RVT-UG28 HTH_Tnp_1 InsE Feature: gene Location: 48776-52057 bp Feature: domain Description: COG0610 Location: 48803-51890 bp Feature: domain Description: COG061 0 Location: 48803-51 890 bp Feature: gene Location: 52071-52781 bp Feature: domain Description: DUF45 Location: 52137-52758 bp Feature: domain Description: DUF45 Location: 521 37-52758 bp Feature: gene Location: 53048-54544 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 53327-53963 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 53327-53963 bp Feature: gene Location: 54694-54828 bp Feature: domain Description: HTH_Tnp_1 Location: 54703-54805 bp Feature: domain Description: HTH_Tnp_1 Location: 54703-54805 bp Feature: gene Location: 54855-54983 bp Feature: domain Description: InsE Location: 54867-54981 bp Feature: domain Description: InsE Location: 54867-54981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG28, HTH_Tnp_1 (pfam01527), InsE (COG2963)

Seq: RACU01000398.1 (24805 bp)
Overview 1 RT 1: 16334-20630 bp Neighborhood of RT #1 [16334, 20713] RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 16334-16513 bp Feature: gene Location: 16697-17095 bp Feature: gene Location: 17245-18513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17458-18115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17458-18115 bp Feature: domain Description: GIIM Note: maturase Location: 18193-18415 bp Feature: domain Description: GIIM Note: maturase Location: 18193-18415 bp Feature: gene Location: 18902-19543 bp Feature: domain Description: DUF772 Location: 19052-19247 bp Feature: domain Description: DUF772 Location: 19052 -192 47 bp Feature: gene Location: 19886-20713 bp Feature: domain Description: ABC_phnC Location: 19916-20630 bp Feature: domain Description: ABC_phnC Location: 19916-2 0630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: RACU01000228.1 (228036 bp)
Overview 1 RT 1: 71669-81965 bp Neighborhood of RT #1 [71669, 81976] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 71669-73522 bp Feature: domain Description: PRK05658 Location: 71681-73520 bp Feature: domain Description: PRK05658 Location: 71681-73 520 bp Feature: gene Location: 73629-77366 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73737-74394 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73 73 7-743 94 bp Feature: domain Description: PRK09776 Location: 74607-75078 bp Feature: domain Description: PRK09776 Location: 74607-75078 bp Feature: domain Description: PAS Location: 75168-75660 bp Feature: domain Description: PAS Location: 75168-75660 bp Feature: domain Description: PRK10060 Location: 75669-77316 bp Feature: domain Description: PRK10060 Location: 75669-773 16 bp Feature: gene Location: 78447-80132 bp Feature: domain Description: RVT_N Location: 78504-78744 bp Feature: domain Description: RVT_N Location: 78504-78744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78792-79428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78792-79428 bp Feature: domain Description: GIIM Note: maturase Location: 79482-79713 bp Feature: domain Description: GIIM Note: maturase Location: 79482-79713 bp Feature: domain Description: HNH Note: nucleases Location: 79965-80103 bp Feature: domain Description: HNH Note: nucleases Location: 79965-80103 bp Feature: gene Location: 80460-80597 bp Feature: gene Location: 80855-81976 bp Feature: domain Description: COG3177 Location: 80873-81965 bp Feature: domain Description: COG3 177 Location: 80873 -81965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )