myRT

myRT report for GCA_003630695.1_ASM363069v1

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Seq: RACM01000066.1 (62083 bp)
Overview 1 RT 1: 10702-14240 bp Neighborhood of RT #1 [10702, 14240] SLATT_5 RVT-UG17 Feature: gene Location: 10702-11022 bp Feature: gene Location: 11383-11925 bp Feature: domain Description: SLATT_5 Location: 11389-11899 bp Feature: domain Description: SLATT_5 Location: 1 1 389-1 1 899 bp Feature: gene Location: 11922-13286 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 12150-12753 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 21 50-1 2753 bp Feature: gene Location: 13328-13798 bp Feature: gene Location: 13815-14240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: RACM01000009.1 (52182 bp)
Overview 1 RT 1: 12876-17255 bp Neighborhood of RT #1 [12876, 17255] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 12876-13703 bp Feature: domain Description: ABC_phnC Location: 12906-13620 bp Feature: domain Description: ABC_phnC Location: 12 906-1362 0 bp Feature: gene Location: 14046-14687 bp Feature: domain Description: DUF772 Location: 14196-14391 bp Feature: domain Description: DUF772 Location: 14196-14391 bp Feature: gene Location: 15076-16344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15289-15946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 89-15946 bp Feature: domain Description: GIIM Note: maturase Location: 16024-16246 bp Feature: domain Description: GIIM Note: maturase Location: 1602 4-162 46 bp Feature: gene Location: 16494-16892 bp Feature: gene Location: 17076-17255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: RACM01000047.1 (262481 bp)
Overview 1 RT 1: 52920-61779 bp 2 RT 2: 78043-88340 bp Neighborhood of RT #1 [52920, 61787] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [78043, 88351] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 52920-53594 bp Feature: domain Description: NTP_transferase_like_1 Location: 52926-53565 bp Feature: domain Description: NTP_transferase_like_1 Location: 52926-53 565 bp Feature: gene Location: 53591-54607 bp Feature: domain Description: COG3178 Location: 53594-54593 bp Feature: domain Description: COG3 178 Location: 53 594-54593 bp Feature: gene Location: 55880-57592 bp Feature: domain Description: RVT_N Location: 55937-56180 bp Feature: domain Description: RVT_N Location: 5593 7-56180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56225-56861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56225-56861 bp Feature: domain Description: YkfC Location: 57071-57221 bp Feature: domain Description: YkfC Location: 57071-57221 bp Feature: domain Description: HNH Note: nucleases Location: 57398-57536 bp Feature: domain Description: HNH Note: nucleases Location: 573 98-5753 6 bp Feature: gene Location: 57725-60514 bp Feature: domain Description: LptD Location: 57920-60500 bp Feature: domain Description: LptD Location: 57920-60500 bp Feature: gene Location: 60573-61787 bp Feature: domain Description: PRK10770 Location: 60585-61779 bp Feature: domain Description: PRK10770 Location: 60585-61779 bp Feature: gene Location: 78043-79896 bp Feature: domain Description: PRK05658 Location: 78055-79894 bp Feature: domain Description: PRK05658 Location: 78055-79894 bp Feature: gene Location: 80003-83740 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 80111-80768 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 80111-80768 bp Feature: domain Description: PRK09776 Location: 80981-81452 bp Feature: domain Description: PRK09776 Location: 80981-81452 bp Feature: domain Description: PAS Location: 81542-82034 bp Feature: domain Description: PAS Location: 81542-8203 4 bp Feature: domain Description: PRK10060 Location: 82043-83690 bp Feature: domain Description: PRK10060 Location: 82043 -83 690 bp Feature: gene Location: 84821-86506 bp Feature: domain Description: RVT_N Location: 84878-85118 bp Feature: domain Description: RVT_N Location: 84878-85118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85166-85802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85166-85802 bp Feature: domain Description: GIIM Note: maturase Location: 85856-86087 bp Feature: domain Description: GIIM Note: maturase Location: 85856-86087 bp Feature: domain Description: HNH Note: nucleases Location: 86339-86477 bp Feature: domain Description: HNH Note: nucleases Location: 863 3 9-86477 bp Feature: gene Location: 86834-86971 bp Feature: gene Location: 87230-88351 bp Feature: domain Description: COG3177 Location: 87248-88340 bp Feature: domain Description: COG3 177 Location: 87248-883 40 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )