myRT

myRT report for GCA_003634175.1_ASM363417v1

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Seq: RBIW01000002.1 (3537944 bp)
Overview 1 RT 1: 1883467-1890699 bp Neighborhood of RT #1 [1883467, 1890699] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM Feature: gene Location: 1883467-1884636 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1883491-1883755 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1 883491 -1 883755 bp Feature: domain Description: Y2_Tnp Location: 1883881-1884442 bp Feature: domain Description: Y2_Tnp Location: 1 883881 -1 884442 bp Feature: gene Location: 1884652-1885530 bp Feature: domain Description: Phage_int_SAM_4 Location: 1884685-1884916 bp Feature: domain Description: Phage_int_SAM_4 Location: 1 884685-1 88491 6 bp Feature: domain Description: INT_IntI_C Location: 1884967-1885471 bp Feature: domain Description: INT_IntI_C Location: 1 884967-1 885471 bp Feature: gene Location: 1886098-1887435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1886449-1887070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 886449-1 887070 bp Feature: domain Description: GIIM Note: maturase Location: 1887121-1887328 bp Feature: domain Description: GIIM Note: maturase Location: 1 8871 21 -1 887328 bp Feature: gene Location: 1887986-1888918 bp Feature: gene Location: 1888915-1890699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, GIIM (pfam08388)

Seq: RBIW01000003.1 (712230 bp)
Overview 1 RT 1: 38100-43414 bp 2 RT 2: 118409-124241 bp 3 RT 3: 652056-655585 bp Neighborhood of RT #1 [38100, 43414] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT-GII GIIM ftrA Neighborhood of RT #2 [118409, 124243] DUF3701 xerC RVT_N RVT-GII GIIM HNH pcaR_pcaU Neighborhood of RT #3 [652056, 655585] HTH_18 RVT-GII GIIM Rve Feature: gene Location: 38100-39269 bp Feature: domain Description: Zn_Tnp_IS91 Location: 38124-38388 bp Feature: domain Description: Zn_Tnp_IS91 Location: 3812 4-38388 bp Feature: domain Description: Y2_Tnp Location: 38514-39075 bp Feature: domain Description: Y2 _Tnp Location: 38514-39075 bp Feature: gene Location: 39285-40163 bp Feature: domain Description: Phage_int_SAM_4 Location: 39318-39549 bp Feature: domain Description: Phage_int_SAM_4 Location: 39318-39549 bp Feature: domain Description: INT_IntI_C Location: 39600-40104 bp Feature: domain Description: INT_IntI_C Location: 39600-40104 bp Feature: gene Location: 40731-42068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41082-41703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41082 -41703 bp Feature: domain Description: GIIM Note: maturase Location: 41754-41961 bp Feature: domain Description: GIIM Note: maturase Location: 41754-41961 bp Feature: gene Location: 42473-42772 bp Feature: domain Description: ftrA Location: 42629-42764 bp Feature: domain Description: ftrA Location: 42 62 9-42 764 bp Feature: gene Location: 42884-43414 bp Feature: gene Location: 118409-118555 bp Feature: gene Location: 118558-120336 bp Feature: domain Description: DUF3701 Location: 118939-119209 bp Feature: domain Description: DUF3701 Location: 118939-1192 09 bp Feature: domain Description: xerC Location: 119335-120322 bp Feature: domain Description: xerC Location: 119335-12 032 2 bp Feature: gene Location: 120454-122322 bp Feature: domain Description: RVT_N Location: 120673-120916 bp Feature: domain Description: RVT_N Location: 12 0673-12 0916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120961-121600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0961-12 1600 bp Feature: domain Description: GIIM Note: maturase Location: 121651-121885 bp Feature: domain Description: GIIM Note: maturase Location: 12 1651-12 1885 bp Feature: domain Description: HNH Note: nucleases Location: 122143-122269 bp Feature: domain Description: HNH Note: nucleases Location: 12 2 143-12 2 2 69 bp Feature: gene Location: 122898-123371 bp Feature: gene Location: 123413-124243 bp Feature: domain Description: pcaR_pcaU Location: 123503-124241 bp Feature: domain Description: pcaR_pcaU Location: 12 3503-12 42 41 bp Feature: gene Location: 652056-652352 bp Feature: domain Description: HTH_18 Location: 652158-652320 bp Feature: domain Description: HTH_18 Location: 652 158-652 32 0 bp Feature: gene Location: 652508-652696 bp Feature: gene Location: 653144-654727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653417-654185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653417-654185 bp Feature: domain Description: GIIM Note: maturase Location: 654278-654458 bp Feature: domain Description: GIIM Note: maturase Location: 6542 78-654458 bp Feature: gene Location: 654802-655233 bp Feature: domain Description: Rve Location: 654808-655177 bp Feature: domain Description: Rve Location: 654808-655177 bp Feature: gene Location: 655274-655585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT-GII, GIIM (pfam08388), ftrA (PRK09393), DUF3701 (pfam12482), xerC (PRK01287), RVT_N (pfam13655)
HNH (pfam01844), pcaR_pcaU (TIGR02431), HTH_18 (pfam12833), Rve (COG3316)

Seq: RBIW01000001.1 (4404085 bp)
Overview 1 RT 1: 867761-874662 bp 2 RT 2: 903391-908379 bp 3 RT 3: 1157242-1165632 bp 4 RT 4: 1313450-1320791 bp Neighborhood of RT #1 [867761, 874856] MFS_SV2_like FkbR2 RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #2 [903391, 908453] RVT-GII GIIM CysQ Neighborhood of RT #3 [1157242, 1165850] DLP_2 DLP_2 RVT-GII GIIM PIN_LabA-like_N_1 Neighborhood of RT #4 [1313450, 1320791] GlxA GyrI-like RVT-Retrons VgrG COG4253 COG4253 Feature: gene Location: 867761-869146 bp Feature: domain Description: MFS_SV2_like Location: 867842-869042 bp Feature: domain Description: MFS_SV2_like Location: 867842-869042 bp Feature: gene Location: 869336-869836 bp Feature: domain Description: FkbR2 Location: 869384-869819 bp Feature: domain Description: FkbR2 Location: 8693 84-869819 bp Feature: gene Location: 870888-872225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 871239-871860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87123 9-871860 bp Feature: domain Description: GIIM Note: maturase Location: 871911-872118 bp Feature: domain Description: GIIM Note: maturase Location: 871911-872118 bp Feature: gene Location: 872793-873671 bp Feature: domain Description: Phage_int_SAM_4 Location: 872826-873057 bp Feature: domain Description: Phage_int_SAM_4 Location: 872826-873 057 bp Feature: domain Description: INT_IntI_C Location: 873108-873612 bp Feature: domain Description: INT_IntI_C Location: 873 108-873 612 bp Feature: gene Location: 873687-874856 bp Feature: domain Description: Zn_Tnp_IS91 Location: 873711-873975 bp Feature: domain Description: Zn_Tnp_IS91 Location: 873 711-873 975 bp Feature: domain Description: Y2_Tnp Location: 874101-874662 bp Feature: domain Description: Y2_Tnp Location: 874101-874662 bp Feature: gene Location: 903391-903663 bp Feature: gene Location: 903946-904341 bp Feature: gene Location: 904833-906116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 905082-905745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 905082-905745 bp Feature: domain Description: GIIM Note: maturase Location: 905814-906030 bp Feature: domain Description: GIIM Note: maturase Location: 905814-90603 0 bp Feature: gene Location: 907008-907151 bp Feature: gene Location: 907665-908453 bp Feature: domain Description: CysQ Location: 907671-908379 bp Feature: domain Description: CysQ Location: 907671-9083 79 bp Feature: gene Location: 1157242-1159152 bp Feature: domain Description: DLP_2 Location: 1157434-1158199 bp Feature: domain Description: DLP_2 Location: 115743 4-1158199 bp Feature: gene Location: 1159149-1160897 bp Feature: domain Description: DLP_2 Location: 1159284-1159833 bp Feature: domain Description: DLP_2 Location: 1159284-115983 3 bp Feature: gene Location: 1161397-1162719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161700-1162339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161700-11623 3 9 bp Feature: domain Description: GIIM Note: maturase Location: 1162414-1162633 bp Feature: domain Description: GIIM Note: maturase Location: 1162414-116263 3 bp Feature: gene Location: 1163456-1164418 bp Feature: gene Location: 1165215-1165850 bp Feature: domain Description: PIN_LabA-like_N_1 Location: 1165305-1165632 bp Feature: domain Description: PIN_LabA-like_N_1 Location: 11653 05-116563 2 bp Feature: gene Location: 1313450-1314316 bp Feature: domain Description: GlxA Location: 1313477-1313795 bp Feature: domain Description: GlxA Location: 13 13 477-13 13 795 bp Feature: domain Description: GyrI-like Location: 1313849-1314311 bp Feature: domain Description: GyrI-like Location: 13 13 849-13 143 11 bp Feature: gene Location: 1314696-1314845 bp Feature: gene Location: 1314995-1316323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1315445-1316084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 15445-13 16084 bp Feature: gene Location: 1317228-1320251 bp Feature: domain Description: VgrG Location: 1317270-1318980 bp Feature: domain Description: VgrG Location: 13 17270-13 18980 bp Feature: domain Description: COG4253 Location: 1319052-1319541 bp Feature: domain Description: COG4253 Location: 13 19052-13 19541 bp Feature: domain Description: COG4253 Location: 1319547-1319961 bp Feature: domain Description: COG4253 Location: 13 19547-13 19961 bp Feature: gene Location: 1320255-1320791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), FkbR2 (cd03451), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), CysQ (COG1218), DLP_2 (cd09912)
PIN_LabA-like_N_1 (cd11297), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons, VgrG (COG3501), COG4253 (Uncharacterized conserved protein, DUF2345 family )