myRT

myRT report for GCA_003634845.1_ASM363484v1

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Seq: RBXG01000004.1 (565096 bp)
Overview 1 RT 1: 113887-117557 bp 2 RT 2: 165084-169900 bp 3 RT 3: 339179-342738 bp Neighborhood of RT #1 [113887, 117730] HTH_21 group_II_RT_mat RVT-GII nodulat_NodC Neighborhood of RT #2 [165084, 169956] nifA RVT-GII PRK09409 COG3547 Neighborhood of RT #3 [339179, 342830] RVT-GII GIIM PRTRC_ThiF Feature: gene Location: 113887-114198 bp Feature: domain Description: HTH_21 Location: 114031-114196 bp Feature: domain Description: HTH_21 Location: 1 1 4031 -1 1 41 96 bp Feature: gene Location: 114296-114820 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 114305-114704 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 1 4305-1 1 4704 bp Feature: gene Location: 114869-115090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114872-115088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4872-1 1 5088 bp Feature: gene Location: 115518-116219 bp Feature: gene Location: 116372-117730 bp Feature: domain Description: nodulat_NodC Location: 116381-117557 bp Feature: domain Description: nodulat_NodC Location: 1 1 6381 -1 1 7557 bp Feature: gene Location: 165084-165260 bp Feature: gene Location: 165509-167344 bp Feature: domain Description: nifA Location: 165668-167342 bp Feature: domain Description: nifA Location: 1 65668-1 67342 bp Feature: gene Location: 167546-167797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167573-167747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67573-1 67747 bp Feature: gene Location: 167816-168658 bp Feature: domain Description: PRK09409 Location: 167828-168644 bp Feature: domain Description: PRK09409 Location: 1 67828-1 68644 bp Feature: gene Location: 168937-169956 bp Feature: domain Description: COG3547 Location: 168955-169900 bp Feature: domain Description: COG3547 Location: 1 68955-1 69900 bp Feature: gene Location: 339179-339589 bp Feature: gene Location: 339660-340178 bp Feature: gene Location: 340202-341572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340529-341150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340529-341 1 50 bp Feature: domain Description: GIIM Note: maturase Location: 341201-341408 bp Feature: domain Description: GIIM Note: maturase Location: 341 201 -341 408 bp Feature: gene Location: 341498-341650 bp Feature: gene Location: 342012-342830 bp Feature: domain Description: PRTRC_ThiF Location: 342033-342738 bp Feature: domain Description: PRTRC_ThiF Location: 342033-342738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), group_II_RT_mat (TIGR04416), RVT-GII, nodulat_NodC (TIGR04242), nifA (TIGR01817), PRK09409 (IS2 transposase TnpB; Reviewed), COG3547 (Transposase ), GIIM (pfam08388), PRTRC_ThiF (TIGR03736)

Seq: RBXG01000003.1 (1330667 bp)
Overview 1 RT 1: 7283-12270 bp Neighborhood of RT #1 [7283, 12270] COG3293 DDE_Tnp_1_2 RVT-UG7 Feature: gene Location: 7283-7687 bp Feature: gene Location: 7843-8649 bp Feature: domain Description: COG3293 Location: 7864-8254 bp Feature: domain Description: COG32 93 Location: 7864-82 54 bp Feature: domain Description: DDE_Tnp_1_2 Location: 8383-8617 bp Feature: domain Description: DDE_Tnp_1_2 Location: 8383-8617 bp Feature: gene Location: 8857-10551 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 9283-9700 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 92 83-9700 bp Feature: gene Location: 11256-11528 bp Feature: gene Location: 11809-12270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), DDE_Tnp_1_2 (pfam13586), RVT-UG7

Seq: RBXG01000001.1 (3836450 bp)
Overview 1 RT 1: 275443-283827 bp 2 RT 2: 698065-704869 bp 3 RT 3: 1634864-1647108 bp 4 RT 4: 3016046-3021541 bp Neighborhood of RT #1 [275443, 283829] uvrC COG3293 DDE_Tnp_1_2 RVT_N RVT-GII GIIM HNHc EarP PRK00529 Neighborhood of RT #2 [698065, 705000] moaC PglL_A Wzy_C Wzy_C_2 RVT_N RVT-GII GIIM HNH PilA R_switched_YjbE Neighborhood of RT #3 [1634864, 1647221] DUF4145 COG4889 RVT-UG2 VirE_N DEXHc_RE SR_Res_par HTH_23 Neighborhood of RT #4 [3016046, 3021585] rve PRK08181 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 275443-277617 bp Feature: domain Description: uvrC Location: 275482-277615 bp Feature: domain Description: uvrC Location: 275482-277615 bp Feature: gene Location: 277834-278640 bp Feature: domain Description: COG3293 Location: 277855-278245 bp Feature: domain Description: COG3 293 Location: 277855-278245 bp Feature: domain Description: DDE_Tnp_1_2 Location: 278374-278608 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2783 74-278608 bp Feature: gene Location: 278673-280268 bp Feature: domain Description: RVT_N Location: 278676-278868 bp Feature: domain Description: RVT_N Location: 278676-278868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278919-279567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278919-279567 bp Feature: domain Description: GIIM Note: maturase Location: 279621-279852 bp Feature: domain Description: GIIM Note: maturase Location: 279621-279852 bp Feature: domain Description: HNHc Note: nucleases Location: 280083-280236 bp Feature: domain Description: HNHc Note: nucleases Location: 280083 -28023 6 bp Feature: gene Location: 281595-282890 bp Feature: domain Description: EarP Location: 281757-282873 bp Feature: domain Description: EarP Location: 281757-282873 bp Feature: gene Location: 283272-283829 bp Feature: domain Description: PRK00529 Location: 283275-283827 bp Feature: domain Description: PRK00529 Location: 283 275-283 827 bp Feature: gene Location: 698065-698541 bp Feature: domain Description: moaC Location: 698071-698536 bp Feature: domain Description: moaC Location: 698071-69853 6 bp Feature: gene Location: 698608-700395 bp Feature: domain Description: PglL_A Location: 699115-699187 bp Feature: domain Description: PglL_A Location: 699115-699187 bp Feature: domain Description: Wzy_C Location: 699235-699697 bp Feature: domain Description: Wzy_C Location: 69923 5-699697 bp Feature: domain Description: Wzy_C_2 Location: 699763-700261 bp Feature: domain Description: Wzy_C_2 Location: 699763 -700261 bp Feature: gene Location: 700523-702130 bp Feature: domain Description: RVT_N Location: 700526-700724 bp Feature: domain Description: RVT_N Location: 700526-700724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700769-701417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700769-701417 bp Feature: domain Description: GIIM Note: maturase Location: 701468-701702 bp Feature: domain Description: GIIM Note: maturase Location: 701468-701702 bp Feature: domain Description: HNH Note: nucleases Location: 701954-702086 bp Feature: domain Description: HNH Note: nucleases Location: 701954-702086 bp Feature: gene Location: 703494-704117 bp Feature: domain Description: PilA Location: 703614-703815 bp Feature: domain Description: PilA Location: 703 614-703 815 bp Feature: gene Location: 704296-705000 bp Feature: domain Description: R_switched_YjbE Location: 704332-704869 bp Feature: domain Description: R_switched_YjbE Location: 7043 3 2-704869 bp Feature: gene Location: 1634864-1635589 bp Feature: domain Description: DUF4145 Location: 1635215-1635440 bp Feature: domain Description: DUF4145 Location: 163 5215-163 5440 bp Feature: gene Location: 1635705-1640696 bp Feature: domain Description: COG4889 Location: 1635717-1640610 bp Feature: domain Description: COG4889 Location: 163 5717-1640610 bp Feature: gene Location: 1640775-1642046 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1640973-1641756 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1640973 -1641756 bp Feature: gene Location: 1643262-1646132 bp Feature: domain Description: VirE_N Location: 1643430-1643814 bp Feature: domain Description: VirE_N Location: 1643 43 0-1643 814 bp Feature: domain Description: DEXHc_RE Location: 1644237-1644459 bp Feature: domain Description: DEXHc_RE Location: 164423 7-1644459 bp Feature: gene Location: 1646517-1647221 bp Feature: domain Description: SR_Res_par Location: 1646526-1646958 bp Feature: domain Description: SR_Res_par Location: 1646526-1646958 bp Feature: domain Description: HTH_23 Location: 1647003-1647108 bp Feature: domain Description: HTH_23 Location: 1647003 -1647108 bp Feature: gene Location: 3016046-3017545 bp Feature: domain Description: rve Location: 3016433-3016817 bp Feature: domain Description: rve Location: 3 01643 3 -3 016817 bp Feature: gene Location: 3017542-3018357 bp Feature: domain Description: PRK08181 Location: 3017554-3018313 bp Feature: domain Description: PRK08181 Location: 3 017554-3 0183 13 bp Feature: gene Location: 3018978-3020288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019269-3019932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 019269-3 01993 2 bp Feature: domain Description: GIIM Note: maturase Location: 3020001-3020217 bp Feature: domain Description: GIIM Note: maturase Location: 3 020001-3 020217 bp Feature: gene Location: 3020507-3020704 bp Feature: domain Description: InsE Location: 3020519-3020696 bp Feature: domain Description: InsE Location: 3 020519-3 020696 bp Feature: gene Location: 3020701-3021585 bp Feature: domain Description: PHA02517 Location: 3020770-3021541 bp Feature: domain Description: PHA02517 Location: 3 020770-3 021541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT uvrC (TIGR00194), COG3293 (Transposase ), DDE_Tnp_1_2 (pfam13586), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), EarP (TIGR03837), PRK00529 (elongation factor P; Validated), moaC (TIGR00581)
PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), HNH (pfam01844), PilA (COG4969), R_switched_YjbE (TIGR03717), DUF4145 (pfam13643), COG4889 (Predicted helicase ), RVT-UG2, VirE_N (pfam08800)
DEXHc_RE (cd17926), SR_Res_par (cd03767), HTH_23 (pfam13384), rve (pfam00665), PRK08181 (transposase; Validated), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)