myRT

myRT report for GCA_003635515.1_ASM363551v1

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Seq: QTNL01000071.1 (16769 bp)
Overview 1 RT 1: 238-4115 bp Neighborhood of RT #1 [238, 4123] Bac_Flav_CT_G RVT-GII RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Feature: gene Location: 238-1314 bp Feature: domain Description: Bac_Flav_CT_G Location: 241-1306 bp Feature: domain Description: Bac_Flav_CT_G Location: 241 -1 306 bp Feature: gene Location: 1328-1480 bp Feature: gene Location: 1862-2314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2126-2276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 26-2276 bp Feature: gene Location: 2311-3684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2317-2947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 7-2947 bp Feature: domain Description: Intron_maturas2 Location: 3121-3322 bp Feature: domain Description: Intron_maturas2 Location: 31 21 -3322 bp Feature: domain Description: HNHc Note: nucleases Location: 3475-3646 bp Feature: domain Description: HNHc Note: nucleases Location: 3475-3646 bp Feature: gene Location: 3760-3903 bp Feature: domain Description: Bac_Flav_CT_G Location: 3787-3886 bp Feature: domain Description: Bac_Flav_CT_G Location: 3787-3886 bp Feature: gene Location: 3944-4123 bp Feature: domain Description: DUF3876 Location: 4025-4115 bp Feature: domain Description: DUF3876 Location: 4025-41 1 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992)

Seq: QTNL01000027.1 (68318 bp)
Overview 1 RT 1: 12570-19528 bp Neighborhood of RT #1 [12570, 19746] HsdM HTH_XRE RVT-UG8 RVT-UG3 Relaxase Feature: gene Location: 12570-14066 bp Feature: domain Description: HsdM Location: 12765-14052 bp Feature: domain Description: HsdM Location: 12 765-14052 bp Feature: gene Location: 14117-14323 bp Feature: domain Description: HTH_XRE Location: 14138-14303 bp Feature: domain Description: HTH_XRE Location: 14138-14303 bp Feature: gene Location: 14588-16771 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 15203-15656 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 152 03-15656 bp Feature: gene Location: 16768-18276 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 17287-17800 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 172 87-17800 bp Feature: gene Location: 18365-18769 bp Feature: gene Location: 18805-19746 bp Feature: domain Description: Relaxase Location: 18829-19528 bp Feature: domain Description: Relaxase Location: 1882 9-1952 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), HTH_XRE (smart00530), RVT-UG8, RVT-UG3, Relaxase (pfam03432)

Seq: QTNL01000098.1 (9577 bp)
Overview 1 RT 1: 5525-9516 bp Neighborhood of RT #1 [5525, 9575] Bac_Flav_CT_J RVT-GII matK HNHc DUF4141 Feature: gene Location: 5525-6529 bp Feature: domain Description: Bac_Flav_CT_J Location: 5531-6500 bp Feature: domain Description: Bac_Flav_CT_J Location: 553 1-6500 bp Feature: gene Location: 6533-7069 bp Feature: gene Location: 7062-8897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7356-8178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 56-8178 bp Feature: domain Description: matK Location: 8355-8568 bp Feature: domain Description: matK Location: 83 55-8568 bp Feature: domain Description: HNHc Note: nucleases Location: 8730-8871 bp Feature: domain Description: HNHc Note: nucleases Location: 873 0-8871 bp Feature: gene Location: 9216-9377 bp Feature: gene Location: 9417-9575 bp Feature: domain Description: DUF4141 Location: 9420-9516 bp Feature: domain Description: DUF4141 Location: 9420-9516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, matK (CHL00002), HNHc (smart00507), DUF4141 (pfam13605)

Seq: QTNL01000006.1 (188942 bp)
Overview 1 RT 1: 6790-9938 bp Neighborhood of RT #1 [6790, 9938] RVT-DGRs Feature: gene Location: 6790-7203 bp Feature: gene Location: 7261-7494 bp Feature: gene Location: 7547-8776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7754-8501 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7754 -8501 bp Feature: gene Location: 8787-9029 bp Feature: gene Location: 9267-9938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTNL01000100.1 (9491 bp)
Overview 1 RT 1: 31-7805 bp Neighborhood of RT #1 [31, 8905] DUF1896 N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C Feature: gene Location: 31-618 bp Feature: domain Description: DUF1896 Location: 196-616 bp Feature: domain Description: DUF1896 Location: 196-616 bp Feature: gene Location: 608-3799 bp Feature: domain Description: N6_Mtase Location: 920-1028 bp Feature: domain Description: N6_Mtase Location: 920-1028 bp Feature: domain Description: N6_Mtase Location: 1166-1523 bp Feature: domain Description: N6_Mtase Location: 1166-15 23 bp Feature: domain Description: COG4646 Location: 2852-3788 bp Feature: domain Description: COG4646 Location: 285 2-3788 bp Feature: gene Location: 4351-6153 bp Feature: domain Description: matK Location: 4420-4507 bp Feature: domain Description: matK Location: 4420-45 07 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4615-5437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4615 -5 437 bp Feature: domain Description: Intron_maturas2 Location: 5587-5821 bp Feature: domain Description: Intron_maturas2 Location: 5 5 87-5 821 bp Feature: gene Location: 6140-8905 bp Feature: domain Description: COG4646 Location: 6254-7394 bp Feature: domain Description: COG4646 Location: 625 4-7394 bp Feature: domain Description: Helicase_C Location: 7607-7805 bp Feature: domain Description: Helicase_C Location: 7607-7805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271)