myRT

myRT report for GCA_003645245.1_ASM364524v1

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Seq: QNEO01000312.1 (8977 bp)
Overview 1 RT 1: 6584-8831 bp Neighborhood of RT #1 [6584, 8974] RVT_N RVT-GII Feature: gene Location: 6584-6715 bp Feature: gene Location: 7374-7598 bp Feature: gene Location: 7823-8974 bp Feature: domain Description: RVT_N Location: 7883-8129 bp Feature: domain Description: RVT_N Location: 7883-81 29 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8171-8831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 71 -8831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QNEO01000137.1 (14648 bp)
Overview 1 RT 1: 6121-12497 bp Neighborhood of RT #1 [6121, 12511] GIIM RVT_N RVT-GII FhaB AAA-ATPase_like PDDEXK_9 Feature: gene Location: 6121-6252 bp Feature: gene Location: 6887-7312 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7115 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7115 bp Feature: gene Location: 7413-8423 bp Feature: domain Description: RVT_N Location: 7491-7734 bp Feature: domain Description: RVT_N Location: 7491-7734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7779-8409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7779-8409 bp Feature: gene Location: 9014-10633 bp Feature: domain Description: FhaB Location: 9071-10397 bp Feature: domain Description: FhaB Location: 9071-10397 bp Feature: gene Location: 10877-12511 bp Feature: domain Description: AAA-ATPase_like Location: 10886-11723 bp Feature: domain Description: AAA-ATPase_like Location: 10886-1172 3 bp Feature: domain Description: PDDEXK_9 Location: 12185-12497 bp Feature: domain Description: PDDEXK_9 Location: 12 185-12 497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT_N (pfam13655), RVT-GII, FhaB (COG3210), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: QNEO01000076.1 (19144 bp)
Overview 1 RT 1: 13854-16398 bp Neighborhood of RT #1 [13854, 16398] RVT-UG4 Feature: gene Location: 13854-14036 bp Feature: gene Location: 14137-14310 bp Feature: gene Location: 14410-15930 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 14884-15319 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 14884-153 19 bp Feature: gene Location: 15961-16122 bp Feature: gene Location: 16201-16398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: QNEO01000229.1 (11343 bp)
Overview 1 RT 1: 1793-8948 bp Neighborhood of RT #1 [1793, 9283] SseC FlgO RVT_N RVT-GII YkfC HNHc CHAT AAA_16 Feature: gene Location: 1793-3037 bp Feature: domain Description: SseC Location: 2678-2879 bp Feature: domain Description: SseC Location: 2678-2879 bp Feature: gene Location: 3423-3980 bp Feature: domain Description: FlgO Location: 3528-3945 bp Feature: domain Description: FlgO Location: 3528-394 5 bp Feature: gene Location: 4116-5849 bp Feature: domain Description: RVT_N Location: 4176-4422 bp Feature: domain Description: RVT_N Location: 4 176-4 4 22 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4464-5124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 64 -5124 bp Feature: domain Description: YkfC Location: 5277-5547 bp Feature: domain Description: YkfC Location: 5277-554 7 bp Feature: domain Description: HNHc Note: nucleases Location: 5634-5784 bp Feature: domain Description: HNHc Note: nucleases Location: 5634 -5784 bp Feature: gene Location: 6440-7195 bp Feature: gene Location: 7397-9283 bp Feature: domain Description: CHAT Location: 7502-8417 bp Feature: domain Description: CHAT Location: 7502-84 17 bp Feature: domain Description: AAA_16 Location: 8585-8948 bp Feature: domain Description: AAA_16 Location: 8585-894 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SseC (pfam04888), FlgO (pfam17680), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), CHAT (pfam12770), AAA_16 (pfam13191)

Seq: QNEO01000515.1 (5732 bp)
Overview 1 RT 1: 2-2288 bp Neighborhood of RT #1 [2, 2288] HNHc RVT-GII GIIM HNHc DUF4435 Feature: gene Location: 2-259 bp Feature: domain Description: HNHc Note: nucleases Location: 35-182 bp Feature: domain Description: HNHc Note: nucleases Location: 35 -182 bp Feature: gene Location: 364-1338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-613 bp Feature: domain Description: GIIM Note: maturase Location: 691-919 bp Feature: domain Description: GIIM Note: maturase Location: 691-919 bp Feature: domain Description: HNHc Note: nucleases Location: 1114-1273 bp Feature: domain Description: HNHc Note: nucleases Location: 1114-1273 bp Feature: gene Location: 1654-2019 bp Feature: domain Description: DUF4435 Location: 1723-1993 bp Feature: domain Description: DUF4435 Location: 1723-1993 bp Feature: gene Location: 2016-2288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, GIIM (pfam08388), DUF4435 (pfam14491)

Seq: QNEO01000145.1 (14454 bp)
Overview 1 RT 1: 433-5527 bp Neighborhood of RT #1 [433, 5529] DUF29 RVT-UNC sdhA_frdA_Gneg Feature: gene Location: 433-1578 bp Feature: domain Description: DUF29 Location: 1255-1498 bp Feature: domain Description: DUF29 Location: 1255-1498 bp Feature: gene Location: 1683-2840 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1698-1866 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 16 98-186 6 bp Feature: gene Location: 3014-3349 bp Feature: gene Location: 3838-5529 bp Feature: domain Description: sdhA_frdA_Gneg Location: 3853-5527 bp Feature: domain Description: sdhA_frdA_Gneg Location: 3853-5527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF29 (pfam01724), RVT-UG10/RVT-CRISPR/RVT-UG12(RVT-UNC), sdhA_frdA_Gneg

Seq: QNEO01000025.1 (26201 bp)
Overview 1 RT 1: 22373-26135 bp Neighborhood of RT #1 [22373, 26200] TMEM43 AlbA_2 RVT_N RVT-GII GIIM HNH Feature: gene Location: 22373-23650 bp Feature: domain Description: TMEM43 Location: 22691-23468 bp Feature: domain Description: TMEM43 Location: 22691-23468 bp Feature: gene Location: 23886-24461 bp Feature: domain Description: AlbA_2 Location: 23994-24405 bp Feature: domain Description: AlbA_2 Location: 23994-24405 bp Feature: gene Location: 24590-26200 bp Feature: domain Description: RVT_N Location: 24596-24773 bp Feature: domain Description: RVT_N Location: 24596-247 7 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24815-25475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24815-2547 5 bp Feature: domain Description: GIIM Note: maturase Location: 25547-25781 bp Feature: domain Description: GIIM Note: maturase Location: 25547 -257 81 bp Feature: domain Description: HNH Note: nucleases Location: 26003-26135 bp Feature: domain Description: HNH Note: nucleases Location: 26003-26135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMEM43 (pfam07787), AlbA_2 (pfam04326), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: QNEO01000221.1 (11568 bp)
Overview 1 RT 1: 158-1878 bp Neighborhood of RT #1 [158, 1878] RVT_N RVT-GII GIIM Feature: gene Location: 158-1483 bp Feature: domain Description: RVT_N Location: 224-470 bp Feature: domain Description: RVT_N Location: 224-470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512-1172 bp Feature: domain Description: GIIM Note: maturase Location: 1244-1454 bp Feature: domain Description: GIIM Note: maturase Location: 1244-1454 bp Feature: gene Location: 1530-1691 bp Feature: gene Location: 1708-1878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QNEO01000321.1 (8670 bp)
Overview 1 RT 1: 210-3615 bp Neighborhood of RT #1 [210, 3731] RVT-UG4 COG3950 COG3950 TIGR02646 Feature: gene Location: 210-1718 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 684-1119 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 684-1119 bp Feature: gene Location: 1882-3138 bp Feature: domain Description: COG3950 Location: 1885-2086 bp Feature: domain Description: COG39 50 Location: 1885-2086 bp Feature: domain Description: COG3950 Location: 2551-2941 bp Feature: domain Description: COG39 50 Location: 2551-29 41 bp Feature: gene Location: 3135-3731 bp Feature: domain Description: TIGR02646 Location: 3234-3615 bp Feature: domain Description: TIGR02646 Location: 3234-3615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: QNEO01000032.1 (24804 bp)
Overview 1 RT 1: 2-9643 bp Neighborhood of RT #1 [2, 10113] RVT_N RVT-GII YkfC HNH PKD PKD PKD PKD PKD PKD PKD PKD PKD PKD PKD PKD PKD PKD PKD Peptidases_S8_Subtilisin_like choice_anch_D Feature: gene Location: 2-1612 bp Feature: domain Description: RVT_N Location: 8-185 bp Feature: domain Description: RVT_N Location: 8-185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-887 bp Feature: domain Description: YkfC Location: 1040-1304 bp Feature: domain Description: YkfC Location: 10 40-1304 bp Feature: domain Description: HNH Note: nucleases Location: 1415-1547 bp Feature: domain Description: HNH Note: nucleases Location: 1415-1547 bp Feature: gene Location: 1768-6264 bp Feature: domain Description: PKD Location: 1840-2050 bp Feature: domain Description: PKD Location: 1840-2050 bp Feature: domain Description: PKD Location: 2107-2335 bp Feature: domain Description: PKD Location: 210 7-2335 bp Feature: domain Description: PKD Location: 2374-2596 bp Feature: domain Description: PKD Location: 2374-2596 bp Feature: domain Description: PKD Location: 2617-2845 bp Feature: domain Description: PKD Location: 2617-2845 bp Feature: domain Description: PKD Location: 2881-3112 bp Feature: domain Description: PKD Location: 2881-3112 bp Feature: domain Description: PKD Location: 3145-3364 bp Feature: domain Description: PKD Location: 3145-3364 bp Feature: domain Description: PKD Location: 3475-3643 bp Feature: domain Description: PKD Location: 3475-3643 bp Feature: domain Description: PKD Location: 3766-3958 bp Feature: domain Description: PKD Location: 3766-3958 bp Feature: domain Description: PKD Location: 4366-4582 bp Feature: domain Description: PKD Location: 4366-4582 bp Feature: domain Description: PKD Location: 5437-5674 bp Feature: domain Description: PKD Location: 5437-5674 bp Feature: gene Location: 6454-10113 bp Feature: domain Description: PKD Location: 6544-6760 bp Feature: domain Description: PKD Location: 6544-6760 bp Feature: domain Description: PKD Location: 6844-7006 bp Feature: domain Description: PKD Location: 6844-7006 bp Feature: domain Description: PKD Location: 7060-7354 bp Feature: domain Description: PKD Location: 7060-7354 bp Feature: domain Description: PKD Location: 7408-7624 bp Feature: domain Description: PKD Location: 7408-7624 bp Feature: domain Description: PKD Location: 7762-7930 bp Feature: domain Description: PKD Location: 7762-7930 bp Feature: domain Description: Peptidases_S8_Subtilisin_like Location: 8500-9331 bp Feature: domain Description: Peptidases_S8_Subtilisin_like Location: 8500-9331 bp Feature: domain Description: choice_anch_D Location: 9337-9643 bp Feature: domain Description: choice_anch_D Location: 9337-9643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PKD (smart00089), Peptidases_S8_Subtilisin_like (cd07473), choice_anch_D (NF012200)