myRT

myRT report for GCA_003646175.1_ASM364617v1

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Seq: QNER01000079.1 (14450 bp)
Overview 1 RT 1: 7043-12536 bp Neighborhood of RT #1 [7043, 12571] SLR RVT_N RVT-GII GIIM McrA DUF262 DUF1524 Feature: gene Location: 7043-7432 bp Feature: domain Description: SLR Location: 7166-7403 bp Feature: domain Description: SLR Location: 71 66-7403 bp Feature: gene Location: 7808-7936 bp Feature: gene Location: 7997-9712 bp Feature: domain Description: RVT_N Location: 8063-8309 bp Feature: domain Description: RVT_N Location: 8063-8309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8357-9029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8357-9029 bp Feature: domain Description: GIIM Note: maturase Location: 9095-9329 bp Feature: domain Description: GIIM Note: maturase Location: 9095-9329 bp Feature: domain Description: McrA Location: 9473-9674 bp Feature: domain Description: McrA Location: 9473-9674 bp Feature: gene Location: 10025-10219 bp Feature: gene Location: 10880-12571 bp Feature: domain Description: DUF262 Location: 10925-11576 bp Feature: domain Description: DUF262 Location: 1 0925-1 1 576 bp Feature: domain Description: DUF1524 Location: 12146-12536 bp Feature: domain Description: DUF1 524 Location: 1 21 46-1 2536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLR (sd00010), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), DUF262 (pfam03235), DUF1524 (pfam07510)

Seq: QNER01000554.1 (5654 bp)
Overview 1 RT 1: 1-1514 bp Neighborhood of RT #1 [1, 1514] RVT-GII GIIM HNH Feature: gene Location: 1-882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124-499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 4-499 bp Feature: domain Description: GIIM Note: maturase Location: 556-787 bp Feature: domain Description: GIIM Note: maturase Location: 556-787 bp Feature: gene Location: 1021-1182 bp Feature: domain Description: HNH Note: nucleases Location: 1024-1153 bp Feature: domain Description: HNH Note: nucleases Location: 102 4-1153 bp Feature: gene Location: 1296-1514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: QNER01000001.1 (45324 bp)
Overview 1 RT 1: 10120-14281 bp Neighborhood of RT #1 [10120, 14325] InsQ SR_IS607_transposase_like RVT_N RVT-GII GIIM HNHc COG2452 Feature: gene Location: 10120-11586 bp Feature: domain Description: InsQ Location: 10543-11557 bp Feature: domain Description: InsQ Location: 10543 -11557 bp Feature: gene Location: 11138-11413 bp Feature: domain Description: SR_IS607_transposase_like Location: 11159-11357 bp Feature: domain Description: SR_IS607_transposase_like Location: 11159-113 57 bp Feature: gene Location: 11583-13400 bp Feature: domain Description: RVT_N Location: 11697-11943 bp Feature: domain Description: RVT_N Location: 11697-11943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12006-12642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12006-12642 bp Feature: domain Description: GIIM Note: maturase Location: 12750-12984 bp Feature: domain Description: GIIM Note: maturase Location: 12750-12984 bp Feature: domain Description: HNHc Note: nucleases Location: 13170-13335 bp Feature: domain Description: HNHc Note: nucleases Location: 13 170-13 3 3 5 bp Feature: gene Location: 13724-13909 bp Feature: gene Location: 13966-14325 bp Feature: domain Description: COG2452 Location: 13993-14281 bp Feature: domain Description: COG2452 Location: 13 993 -14281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), SR_IS607_transposase_like (cd03769), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG2452 (Predicted site-specific integrase-resolvase )

Seq: QNER01000027.1 (20512 bp)
Overview 1 RT 1: 2081-4711 bp Neighborhood of RT #1 [2081, 4711] RVT-UG4 Feature: gene Location: 2081-2680 bp Feature: gene Location: 2993-3172 bp Feature: gene Location: 3178-3381 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3181-3349 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3181-334 9 bp Feature: gene Location: 4170-4520 bp Feature: gene Location: 4526-4711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4

Seq: QNER01000648.1 (5112 bp)
Overview 1 RT 1: 3235-4573 bp Neighborhood of RT #1 [3235, 4773] Avd_like RVT-DGRs Feature: gene Location: 3235-3531 bp Feature: domain Description: Avd_like Location: 3259-3517 bp Feature: domain Description: Avd_like Location: 325 9-35 17 bp Feature: gene Location: 3809-3958 bp Feature: gene Location: 4141-4773 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4189-4573 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4189-45 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: QNER01000117.1 (12461 bp)
Overview 1 RT 1: 10114-12460 bp Neighborhood of RT #1 [10114, 12459] PRK03170 RVT_N RVT-GII Feature: gene Location: 10114-10989 bp Feature: domain Description: PRK03170 Location: 10117-10984 bp Feature: domain Description: PRK03170 Location: 10117-10984 bp Feature: gene Location: 11151-11321 bp Feature: gene Location: 11683-12459 bp Feature: domain Description: RVT_N Location: 11788-12010 bp Feature: domain Description: RVT_N Location: 11788-12010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12058-12460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12058-1246 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03170 (dihydrodipicolinate synthase; Provisional), RVT_N (pfam13655), RVT-GII

Seq: QNER01000657.1 (5080 bp)
Overview 1 RT 1: 392-3408 bp Neighborhood of RT #1 [392, 3408] CytC553 Cytochrom_C Cytochrom_C RVT-GII DUF1902 Feature: gene Location: 392-1288 bp Feature: domain Description: CytC553 Location: 500-605 bp Feature: domain Description: CytC553 Location: 500-605 bp Feature: domain Description: Cytochrom_C Location: 755-851 bp Feature: domain Description: Cytochrom_C Location: 7 55-851 bp Feature: domain Description: Cytochrom_C Location: 965-1286 bp Feature: domain Description: Cytochrom_C Location: 965-1286 bp Feature: gene Location: 1628-1912 bp Feature: gene Location: 2051-2188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063-2174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063-217 4 bp Feature: gene Location: 2492-2767 bp Feature: domain Description: DUF1902 Location: 2555-2699 bp Feature: domain Description: DUF1902 Location: 2555-2699 bp Feature: gene Location: 3217-3408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytC553 (COG2863), Cytochrom_C (pfam00034), RVT-GII, DUF1902 (pfam08972)

Seq: QNER01000454.1 (6514 bp)
Overview 1 RT 1: 1574-5731 bp Neighborhood of RT #1 [1574, 5751] RVT-GII GIIM HNHc RVT_N RVT-GII InsQ Feature: gene Location: 1574-1756 bp Feature: gene Location: 1767-2120 bp Feature: gene Location: 2188-3441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2191-2581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2191-258 1 bp Feature: domain Description: GIIM Note: maturase Location: 2728-2944 bp Feature: domain Description: GIIM Note: maturase Location: 2728 -2944 bp Feature: domain Description: HNHc Note: nucleases Location: 3124-3277 bp Feature: domain Description: HNHc Note: nucleases Location: 3124-3277 bp Feature: gene Location: 3426-4079 bp Feature: domain Description: RVT_N Location: 3513-3756 bp Feature: domain Description: RVT_N Location: 3513-3756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3822-4041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 22-4041 bp Feature: gene Location: 4411-4620 bp Feature: gene Location: 4681-5751 bp Feature: domain Description: InsQ Location: 4774-5731 bp Feature: domain Description: InsQ Location: 4774-5731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), InsQ (COG0675)

Seq: QNER01000028.1 (20387 bp)
Overview 1 RT 1: 318-4242 bp 2 RT 2: 6546-11479 bp Neighborhood of RT #1 [318, 4242] RVT-UG4 RVT-UG4 Neighborhood of RT #2 [6546, 11479] RVT-UG4 dCMP_cyt_deam_1 Feature: gene Location: 318-485 bp Feature: gene Location: 866-1090 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 872-1031 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 872-1031 bp Feature: gene Location: 1367-1969 bp Feature: gene Location: 1962-2234 bp Feature: gene Location: 2240-2428 bp Feature: gene Location: 2564-3157 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2573-3023 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2573-3023 bp Feature: gene Location: 3513-3893 bp Feature: gene Location: 3955-4242 bp Feature: gene Location: 6546-7178 bp Feature: gene Location: 7371-7553 bp Feature: gene Location: 7668-8186 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7674-8016 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7674-8016 bp Feature: gene Location: 8610-9512 bp Feature: domain Description: dCMP_cyt_deam_1 Location: 9147-9393 bp Feature: domain Description: dCMP_cyt_deam_1 Location: 9 147-9 39 3 bp Feature: gene Location: 9866-11479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, dCMP_cyt_deam_1 (pfam00383)