myRT

myRT report for GCA_003660235.1_ASM366023v1

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Seq: QGON01000019.1 (4795 bp)
Overview 1 RT 1: 119-3153 bp Neighborhood of RT #1 [119, 4478] RVT-CRISPR-like Feature: gene Location: 119-289 bp Feature: gene Location: 618-4478 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2730-3153 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2730-31 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: QGON01000060.1 (116618 bp)
Overview 1 RT 1: 35646-41046 bp Neighborhood of RT #1 [35646, 41046] YbeY PhoH RVT-GII GIIM Feature: gene Location: 35646-36107 bp Feature: domain Description: YbeY Location: 35652-36096 bp Feature: domain Description: YbeY Location: 35652 -36096 bp Feature: gene Location: 36250-37251 bp Feature: domain Description: PhoH Location: 36277-37228 bp Feature: domain Description: PhoH Location: 362 77-372 2 8 bp Feature: gene Location: 37605-38888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37842-38499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37842 -38499 bp Feature: domain Description: GIIM Note: maturase Location: 38580-38799 bp Feature: domain Description: GIIM Note: maturase Location: 38580-38799 bp Feature: gene Location: 39108-40274 bp Feature: gene Location: 40456-41046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbeY (COG0319), PhoH (pfam02562), RVT-GII, GIIM (pfam08388)

Seq: QGON01000038.1 (30941 bp)
Overview 1 RT 1: 23933-29012 bp Neighborhood of RT #1 [23933, 29032] Peptidases_S8_BacillopeptidaseF-like Calx_beta Calx_beta Calx_beta GIIM RVT-GII InsE PHA02517 Feature: gene Location: 23933-26851 bp Feature: domain Description: Peptidases_S8_BacillopeptidaseF-like Location: 24500-25241 bp Feature: domain Description: Peptidases_S8_BacillopeptidaseF-like Location: 24500-25241 bp Feature: domain Description: Calx_beta Location: 25370-25637 bp Feature: domain Description: Calx_beta Location: 253 70-2563 7 bp Feature: domain Description: Calx_beta Location: 25715-25979 bp Feature: domain Description: Calx_beta Location: 25715-25979 bp Feature: domain Description: Calx_beta Location: 26066-26324 bp Feature: domain Description: Calx_beta Location: 26066-263 24 bp Feature: gene Location: 26880-27320 bp Feature: domain Description: GIIM Note: maturase Location: 26958-27171 bp Feature: domain Description: GIIM Note: maturase Location: 26958-27171 bp Feature: gene Location: 27317-27766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27362-27710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273 62-27710 bp Feature: gene Location: 27864-28157 bp Feature: domain Description: InsE Location: 27876-28149 bp Feature: domain Description: InsE Location: 27876-28149 bp Feature: gene Location: 28154-29032 bp Feature: domain Description: PHA02517 Location: 28220-29012 bp Feature: domain Description: PHA02517 Location: 28220-29012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_BacillopeptidaseF-like (cd07481), Calx_beta (smart00237), GIIM (pfam08388), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: QGON01000014.1 (4168 bp)
Overview 1 RT 1: 3-3593 bp Neighborhood of RT #1 [3, 3593] RVT-UG11 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 3-2360 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 249-390 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24 9-390 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 711-1062 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 711-1062 bp Feature: domain Description: Integrase_H2C2 Location: 1257-1422 bp Feature: domain Description: Integrase_H2C2 Location: 1257-14 22 bp Feature: domain Description: rve Location: 1470-1803 bp Feature: domain Description: rve Location: 14 70-1803 bp Feature: gene Location: 2496-2699 bp Feature: gene Location: 2709-3593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QGON01000024.1 (5678 bp)
Overview 1 RT 1: 1077-5408 bp Neighborhood of RT #1 [1077, 5408] RP_Saci_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 1077-2045 bp Feature: gene Location: 2078-2494 bp Feature: domain Description: RP_Saci_like Location: 2084-2348 bp Feature: domain Description: RP_Saci_like Location: 2084-2348 bp Feature: gene Location: 2473-5193 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2974-3133 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2974-3133 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3466-3826 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3466-3826 bp Feature: domain Description: Integrase_H2C2 Location: 4039-4201 bp Feature: domain Description: Integrase_H2C2 Location: 4039-4201 bp Feature: domain Description: rve Location: 4261-4582 bp Feature: domain Description: rve Location: 4261-45 82 bp Feature: gene Location: 5220-5408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RP_Saci_like (cd06094), RVT-UG17/RVT-UG26/RVT-UG20(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QGON01000020.1 (4868 bp)
Overview 1 RT 1: 785-2996 bp Neighborhood of RT #1 [785, 4315] RVT-CRISPR-like Feature: gene Location: 785-4315 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2399-2996 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2399-2996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: QGON01000049.1 (66114 bp)
Overview 1 RT 1: 54041-59343 bp Neighborhood of RT #1 [54041, 59375] COG5635 pfam03781 Avd_like RVT-DGRs RelE Feature: gene Location: 54041-56914 bp Feature: domain Description: COG5635 Location: 54464-55673 bp Feature: domain Description: COG5635 Location: 54464-5567 3 bp Feature: domain Description: pfam03781 Location: 56183-56903 bp Feature: domain Description: pfam037 81 Location: 56183-56903 bp Feature: gene Location: 56984-57358 bp Feature: domain Description: Avd_like Location: 57020-57326 bp Feature: domain Description: Avd_like Location: 57 020-57 326 bp Feature: gene Location: 57441-58412 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57549-58194 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57 549-58194 bp Feature: gene Location: 58498-58656 bp Feature: gene Location: 59106-59375 bp Feature: domain Description: RelE Location: 59112-59343 bp Feature: domain Description: RelE Location: 59112-59343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, RelE (pfam06296)

Seq: QGON01000026.1 (6654 bp)
Overview 1 RT 1: 546-6171 bp Neighborhood of RT #1 [546, 6171] RT_G2_intron RVT-CRISPR-like Feature: gene Location: 546-1124 bp Feature: gene Location: 1534-1707 bp Feature: gene Location: 2159-4516 bp Feature: domain Description: RT_G2_intron Location: 2444-2774 bp Feature: domain Description: RT_G2_intron Location: 2444-2774 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2978-3122 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2978 -3122 bp Feature: gene Location: 4498-4848 bp Feature: gene Location: 4873-6171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_G2_intron (cd01651), RVT-CRISPR

Seq: QGON01000013.1 (4155 bp)
Overview 1 RT 1: 117-3807 bp Neighborhood of RT #1 [117, 3807] RVT-GII GIIM RVT-GII GIIM RVT-GII Feature: gene Location: 117-707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201-354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201-354 bp Feature: domain Description: GIIM Note: maturase Location: 435-645 bp Feature: domain Description: GIIM Note: maturase Location: 435-645 bp Feature: gene Location: 691-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 895-1552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89 5-1552 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1852 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1852 bp Feature: gene Location: 2426-3253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2711-3203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2711-3203 bp Feature: gene Location: 3329-3466 bp Feature: gene Location: 3625-3807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QGON01000008.1 (3468 bp)
Overview 1 RT 1: 1-2841 bp Neighborhood of RT #1 [1, 3455] AIR1 retropepsin_like_LTR_2 RT_LTR RVT-UG11 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 1-402 bp Feature: domain Description: AIR1 Location: 25-289 bp Feature: domain Description: AIR1 Location: 25-289 bp Feature: gene Location: 399-1079 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 408-642 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 408-642 bp Feature: domain Description: RT_LTR Location: 876-1077 bp Feature: domain Description: RT_LTR Location: 876-10 77 bp Feature: gene Location: 1089-2252 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1230-1350 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1230-1350 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1683-2049 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1683-2049 bp Feature: gene Location: 2280-3455 bp Feature: domain Description: Integrase_H2C2 Location: 2322-2484 bp Feature: domain Description: Integrase_H2C2 Location: 2322-2484 bp Feature: domain Description: rve Location: 2565-2841 bp Feature: domain Description: rve Location: 2565-2841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), retropepsin_like_LTR_2 (cd05484), RT_LTR (cd01647), RVT-UG11, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QGON01000070.1 (376551 bp)
Overview 1 RT 1: 158932-164358 bp Neighborhood of RT #1 [158932, 164405] TIGR03986 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Cas2_I_II_III Feature: gene Location: 158932-160977 bp Feature: domain Description: TIGR03986 Location: 158953-160669 bp Feature: domain Description: TIGR03986 Location: 158953-160669 bp Feature: gene Location: 160974-161783 bp Feature: gene Location: 161789-163840 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 161999-162605 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 161999-162605 bp Feature: domain Description: Cas1_I-II-III Location: 162842-163805 bp Feature: domain Description: Cas1_I-II-III Location: 162842-163805 bp Feature: gene Location: 163837-164127 bp Feature: domain Description: Cas2_I_II_III Location: 163864-164089 bp Feature: domain Description: Cas2_I_II_III Location: 163864-164089 bp Feature: gene Location: 164124-164405 bp Feature: domain Description: Cas2_I_II_III Location: 164139-164358 bp Feature: domain Description: Cas2_I_II_III Location: 164139-164358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03986 (CRISPR-associated protein), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: QGON01000017.1 (4757 bp)
Overview 1 RT 1: 898-4750 bp Neighborhood of RT #1 [898, 4755] rve AIR1 retropepsin_like_LTR_2 RVT-UNC RT_RNaseH_2 Feature: gene Location: 898-1632 bp Feature: domain Description: rve Location: 910-1174 bp Feature: domain Description: rve Location: 910-1174 bp Feature: gene Location: 1605-1784 bp Feature: gene Location: 2440-4755 bp Feature: domain Description: AIR1 Location: 3073-3223 bp Feature: domain Description: AIR1 Location: 3073-3223 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 3355-3631 bp Feature: domain Description: retropepsin_like_LTR_2 Location: 3355-3631 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4243-4414 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4243-4414 bp Feature: domain Description: RT_RNaseH_2 Location: 4606-4750 bp Feature: domain Description: RT_RNaseH_2 Location: 4606-4750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), AIR1 (COG5082), retropepsin_like_LTR_2 (cd05484), RVT-UG11/RVT-DGRs/RVT-UG17(RVT-UNC), RT_RNaseH_2 (pfam17919)

Seq: QGON01000071.1 (552323 bp)
Overview 1 RT 1: 469220-471446 bp Neighborhood of RT #1 [469220, 471478] RVT-DGRs RVT-DGRs RAYT Feature: gene Location: 469220-469405 bp Feature: gene Location: 469416-469760 bp Feature: gene Location: 469805-470035 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 469808-470033 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 469808-470033 bp Feature: gene Location: 470053-470469 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 470056-470260 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 470056-470260 bp Feature: gene Location: 470607-470774 bp Feature: gene Location: 471026-471478 bp Feature: domain Description: RAYT Location: 471065-471446 bp Feature: domain Description: RAYT Location: 471065-471446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, RAYT (COG1943)

Seq: QGON01000012.1 (4138 bp)
Overview 1 RT 1: 2-3896 bp Neighborhood of RT #1 [2, 3896] RVT-DGRs RNase_HI_RT_DIRS1 Feature: gene Location: 2-454 bp Feature: gene Location: 556-2085 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 871-1303 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 871-1303 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 1639-1993 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 1639-1993 bp Feature: gene Location: 2147-3562 bp Feature: gene Location: 3741-3896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, RNase_HI_RT_DIRS1 (cd09275)

Seq: QGON01000005.1 (3016 bp)
Overview 1 RT 1: 1-1108 bp Neighborhood of RT #1 [1, 2424] RVT-CRISPR-like Feature: gene Location: 1-2424 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 514-1108 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 514-1108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR