myRT

myRT report for GCA_003670205.1_ASM367020v1

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Seq: RAYS01000184.1 (1905 bp)
Overview 1 RT 1: 3-1715 bp Neighborhood of RT #1 [3, 1825] RVT-GII GIIM Feature: gene Location: 3-173 bp Feature: gene Location: 556-1470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1 426 bp Feature: gene Location: 1355-1825 bp Feature: domain Description: GIIM Note: maturase Location: 1508-1715 bp Feature: domain Description: GIIM Note: maturase Location: 1 508-1 71 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RAYS01000015.1 (85409 bp)
Overview 1 RT 1: 34523-38391 bp Neighborhood of RT #1 [34523, 38405] SpmA SpmB TIGR00043 RVT-GII GIIM DUF3791 Feature: gene Location: 34523-35755 bp Feature: domain Description: SpmA Location: 34532-35132 bp Feature: domain Description: SpmA Location: 34532 -35132 bp Feature: domain Description: SpmB Location: 35267-35750 bp Feature: domain Description: SpmB Location: 352 67-35750 bp Feature: gene Location: 35772-36191 bp Feature: domain Description: TIGR00043 Location: 35883-36180 bp Feature: domain Description: TIGR00043 Location: 35883-36180 bp Feature: gene Location: 36358-37764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36700-37318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36700-37318 bp Feature: domain Description: GIIM Note: maturase Location: 37375-37603 bp Feature: domain Description: GIIM Note: maturase Location: 37375-37603 bp Feature: gene Location: 37933-38061 bp Feature: gene Location: 38190-38405 bp Feature: domain Description: DUF3791 Location: 38211-38391 bp Feature: domain Description: DUF3791 Location: 382 11-38391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpmA (COG2715), SpmB (COG0700), TIGR00043 (rRNA maturation RNase YbeY), RVT-GII, GIIM (pfam08388), DUF3791 (pfam12668)

Seq: RAYS01000041.1 (45442 bp)
Overview 1 RT 1: 39677-45324 bp Neighborhood of RT #1 [39677, 45329] PRK00566 RVT-GII Feature: gene Location: 39677-43960 bp Feature: domain Description: PRK00566 Location: 39698-43919 bp Feature: domain Description: PRK00566 Location: 3 9698-43 919 bp Feature: gene Location: 44020-44268 bp Feature: gene Location: 44436-45329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44760-45324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44760-453 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-GII

Seq: RAYS01000227.1 (513 bp)
Overview 1 RT 1: 3-306 bp Neighborhood of RT #1 [3, 512] RVT-UG10 Feature: gene Location: 3-512 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 81-306 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 81-306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10

Seq: RAYS01000050.1 (36064 bp)
Overview 1 RT 1: 6998-10780 bp Neighborhood of RT #1 [6998, 10863] PRK07983 PRK07983 RVT-G2Lc DDE_Tnp_IS66 Feature: gene Location: 6998-7651 bp Feature: domain Description: PRK07983 Location: 7349-7433 bp Feature: domain Description: PRK07983 Location: 7349-7433 bp Feature: domain Description: PRK07983 Location: 7520-7610 bp Feature: domain Description: PRK07983 Location: 75 20-7610 bp Feature: gene Location: 7669-8238 bp Feature: gene Location: 8542-9747 bp Feature: RT Description: RVT-G2Lc Note: G2Lc RT Location: 8728-9391 bp Feature: RT Description: RVT-G2Lc Note: G2Lc RT Location: 8728-9391 bp Feature: gene Location: 9902-10039 bp Feature: gene Location: 10054-10863 bp Feature: domain Description: DDE_Tnp_IS66 Location: 10057-10780 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1005 7-10780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07983 (exodeoxyribonuclease X; Provisional), RVT-G2Lc, DDE_Tnp_IS66 (pfam03050)

Seq: RAYS01000018.1 (42645 bp)
Overview 1 RT 1: 39235-42643 bp Neighborhood of RT #1 [39235, 42643] RVT-DGRs Feature: gene Location: 39235-39987 bp Feature: gene Location: 40221-40595 bp Feature: gene Location: 40605-41948 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40812-41403 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40812-41403 bp Feature: gene Location: 42070-42255 bp Feature: gene Location: 42380-42643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: RAYS01000002.1 (91508 bp)
Overview 1 RT 1: 11773-15444 bp Neighborhood of RT #1 [11773, 15444] MRP-L20 RVT-UG27 Feature: gene Location: 11773-12390 bp Feature: gene Location: 12467-12697 bp Feature: domain Description: MRP-L20 Location: 12491-12659 bp Feature: domain Description: MRP-L20 Location: 12491-12659 bp Feature: gene Location: 12694-13962 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 12883-13519 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 12883-13519 bp Feature: gene Location: 14279-14506 bp Feature: gene Location: 14848-15444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MRP-L20 (pfam12824), RVT-UG27

Seq: RAYS01000011.1 (93931 bp)
Overview 1 RT 1: 25001-29555 bp Neighborhood of RT #1 [25001, 29578] DUF1738 MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 25001-25261 bp Feature: gene Location: 25369-27021 bp Feature: domain Description: DUF1738 Location: 25492-25771 bp Feature: domain Description: DUF1738 Location: 25492-25771 bp Feature: domain Description: MPTase-PolyVal Location: 25939-26248 bp Feature: domain Description: MPTase-PolyVal Location: 25939-26248 bp Feature: gene Location: 27011-28822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27275-28097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27275-28 097 bp Feature: domain Description: Intron_maturas2 Location: 28256-28493 bp Feature: domain Description: Intron_maturas2 Location: 28 256-28 493 bp Feature: gene Location: 29103-29264 bp Feature: gene Location: 29360-29578 bp Feature: domain Description: DUF1738 Location: 29408-29555 bp Feature: domain Description: DUF1738 Location: 29408 -29555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348)

Seq: RAYS01000017.1 (76147 bp)
Overview 1 RT 1: 3-3364 bp Neighborhood of RT #1 [3, 3364] RVT-DGRs Feature: gene Location: 3-158 bp Feature: gene Location: 378-734 bp Feature: gene Location: 741-2102 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 945-1539 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9 45-1539 bp Feature: gene Location: 2115-2486 bp Feature: gene Location: 2498-3364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: RAYS01000038.1 (47299 bp)
Overview 1 RT 1: 5476-8644 bp Neighborhood of RT #1 [5476, 8676] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 5476-5721 bp Feature: gene Location: 5705-6211 bp Feature: gene Location: 6279-7769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6672-7269 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6672-7269 bp Feature: gene Location: 8016-8327 bp Feature: domain Description: HTH_XRE Location: 8130-8283 bp Feature: domain Description: HTH_XRE Location: 8130-8283 bp Feature: gene Location: 8332-8676 bp Feature: domain Description: Gp49 Location: 8386-8644 bp Feature: domain Description: Gp49 Location: 8386-8644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: RAYS01000001.1 (97092 bp)
Overview 1 RT 1: 58922-69243 bp Neighborhood of RT #1 [58922, 69254] DUF1566 RVT-DGRs Avd_like DUF1566 Feature: gene Location: 58922-60880 bp Feature: gene Location: 60943-61296 bp Feature: gene Location: 61287-62708 bp Feature: domain Description: DUF1566 Location: 61359-61503 bp Feature: domain Description: DUF1566 Location: 61359-61503 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61692-62430 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61692-62430 bp Feature: gene Location: 62721-63122 bp Feature: domain Description: Avd_like Location: 62760-63099 bp Feature: domain Description: Avd_like Location: 62760-63099 bp Feature: gene Location: 63252-69254 bp Feature: domain Description: DUF1566 Location: 68940-69243 bp Feature: domain Description: DUF1566 Location: 68940-69243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: RAYS01000006.1 (108364 bp)
Overview 1 RT 1: 83931-87503 bp Neighborhood of RT #1 [83931, 87517] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 83931-84230 bp Feature: domain Description: DUF4133 Location: 83973-84153 bp Feature: domain Description: DUF4133 Location: 83973-84153 bp Feature: gene Location: 84279-84473 bp Feature: domain Description: DUF4134 Location: 84369-84459 bp Feature: domain Description: DUF4134 Location: 84369-84459 bp Feature: gene Location: 84498-86309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84762-85584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84762-85584 bp Feature: domain Description: Intron_maturas2 Location: 85773-85983 bp Feature: domain Description: Intron_maturas2 Location: 85773-85983 bp Feature: domain Description: HNHc Note: nucleases Location: 86133-86238 bp Feature: domain Description: HNHc Note: nucleases Location: 86133-86238 bp Feature: gene Location: 86851-87129 bp Feature: domain Description: DUF4134 Location: 86914-87109 bp Feature: domain Description: DUF4134 Location: 86914-87109 bp Feature: gene Location: 87188-87517 bp Feature: domain Description: DUF4134 Location: 87215-87503 bp Feature: domain Description: DUF4134 Location: 87215-87503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: RAYS01000147.1 (6112 bp)
Overview 1 RT 1: 3019-5871 bp Neighborhood of RT #1 [3019, 5882] CcmA RVT-GII group_II_RT_mat Feature: gene Location: 3019-3849 bp Feature: gene Location: 3856-4755 bp Feature: domain Description: CcmA Location: 3913-4597 bp Feature: domain Description: CcmA Location: 3913 -4597 bp Feature: gene Location: 4889-5677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4931-5546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4931-5546 bp Feature: gene Location: 5670-5882 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5748-5871 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5748-5871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: RAYS01000010.1 (75961 bp)
Overview 1 RT 1: 192-3178 bp Neighborhood of RT #1 [192, 3178] RVT-DGRs Feature: gene Location: 192-548 bp Feature: gene Location: 555-1916 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 759-1353 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 759-1353 bp Feature: gene Location: 1929-2300 bp Feature: gene Location: 2312-3178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: RAYS01000211.1 (705 bp)
Overview 1 RT 1: 1-256 bp Neighborhood of RT #1 [1, 702] RVT-UNC Feature: gene Location: 1-702 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 22-256 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 22-256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-UG19/RVT-GII/RVT-UG17(RVT-UNC)