myRT

myRT report for GCA_003698625.1_ASM369862v1

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Seq: MCNA01000006.1 (425024 bp)
Overview 1 RT 1: 49563-58404 bp 2 RT 2: 74668-85338 bp Neighborhood of RT #1 [49563, 58412] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74668, 85403] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49563-50237 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: gene Location: 50234-51250 bp Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: domain Description: COG31 78 Location: 50237-51 236 bp Feature: gene Location: 52523-54235 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: YkfC Location: 5371 4-53864 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: domain Description: HNH Note: nucleases Location: 54041 -541 79 bp Feature: gene Location: 54368-57139 bp Feature: domain Description: LptD Location: 54563-57125 bp Feature: domain Description: LptD Location: 54563-571 25 bp Feature: gene Location: 57198-58412 bp Feature: domain Description: PRK10770 Location: 57210-58404 bp Feature: domain Description: PRK1 0770 Location: 5721 0-58404 bp Feature: gene Location: 74668-76521 bp Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: domain Description: PRK05658 Location: 74680-7651 9 bp Feature: gene Location: 76628-80365 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PAS Location: 78134-78659 bp Feature: domain Description: PAS Location: 781 34-78659 bp Feature: domain Description: PRK10060 Location: 78671-80315 bp Feature: domain Description: PRK1 0060 Location: 78671 -8031 5 bp Feature: gene Location: 81446-83131 bp Feature: domain Description: RVT_N Location: 81503-81743 bp Feature: domain Description: RVT_N Location: 81 503-81 743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 791 -82427 bp Feature: domain Description: GIIM Note: maturase Location: 82481-82712 bp Feature: domain Description: GIIM Note: maturase Location: 82481 -8271 2 bp Feature: domain Description: HNH Note: nucleases Location: 82964-83102 bp Feature: domain Description: HNH Note: nucleases Location: 82964-831 02 bp Feature: gene Location: 83854-84975 bp Feature: domain Description: COG3177 Location: 83872-84964 bp Feature: domain Description: COG31 77 Location: 83872-84964 bp Feature: gene Location: 85188-85403 bp Feature: domain Description: NERD Location: 85215-85338 bp Feature: domain Description: NERD Location: 8521 5-85338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: MCNA01000003.1 (579677 bp)
Overview 1 RT 1: 26053-34225 bp Neighborhood of RT #1 [26053, 34419] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 26053-27924 bp Feature: domain Description: DUF262 Location: 26101-26869 bp Feature: domain Description: DUF2 62 Location: 2 6101-2 6869 bp Feature: gene Location: 27928-29709 bp Feature: domain Description: YeeA Location: 28795-29575 bp Feature: domain Description: YeeA Location: 2 8795-2 9575 bp Feature: gene Location: 29706-32726 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30201-30672 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 302 01-30672 bp Feature: gene Location: 32723-33175 bp Feature: gene Location: 33280-34419 bp Feature: domain Description: AAA_21 Location: 33352-33421 bp Feature: domain Description: AAA_2 1 Location: 33352 -3342 1 bp Feature: domain Description: AAA_21 Location: 33895-34225 bp Feature: domain Description: AAA_2 1 Location: 33895-342 2 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: MCNA01000009.1 (260085 bp)
Overview 1 RT 1: 254256-259786 bp Neighborhood of RT #1 [254256, 260082] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 254256-255800 bp Feature: domain Description: CHD Location: 254472-254886 bp Feature: domain Description: CHD Location: 254472-254886 bp Feature: domain Description: CHD Location: 255114-255603 bp Feature: domain Description: CHD Location: 255114-255603 bp Feature: gene Location: 256884-257063 bp Feature: gene Location: 257795-259201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258146-258803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258146-258803 bp Feature: domain Description: GIIM Note: maturase Location: 258881-259103 bp Feature: domain Description: GIIM Note: maturase Location: 258881-259103 bp Feature: gene Location: 259453-260082 bp Feature: domain Description: DUF772 Location: 259591-259786 bp Feature: domain Description: DUF772 Location: 259591-259786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)