myRT

myRT report for GCA_003698635.1_ASM369863v1

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Seq: MCMZ01000009.1 (262447 bp)
Overview 1 RT 1: 256618-262148 bp Neighborhood of RT #1 [256618, 262444] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 256618-258162 bp Feature: domain Description: CHD Location: 256834-257248 bp Feature: domain Description: CHD Location: 256834-257248 bp Feature: domain Description: CHD Location: 257476-257965 bp Feature: domain Description: CHD Location: 257476-257965 bp Feature: gene Location: 259246-259425 bp Feature: gene Location: 260157-261563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260508-261165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260508-261 1 65 bp Feature: domain Description: GIIM Note: maturase Location: 261243-261465 bp Feature: domain Description: GIIM Note: maturase Location: 261 243-261 465 bp Feature: gene Location: 261815-262444 bp Feature: domain Description: DUF772 Location: 261953-262148 bp Feature: domain Description: DUF772 Location: 261 953-2621 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: MCMZ01000004.1 (424522 bp)
Overview 1 RT 1: 49563-58404 bp 2 RT 2: 74668-85338 bp Neighborhood of RT #1 [49563, 58412] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74668, 85403] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49563-50237 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-502 08 bp Feature: gene Location: 50234-51250 bp Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: domain Description: COG3178 Location: 502 37-512 36 bp Feature: gene Location: 52523-54235 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: domain Description: RVT_N Location: 52 580-52 82 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 868-53504 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: gene Location: 54368-57139 bp Feature: domain Description: LptD Location: 54563-57125 bp Feature: domain Description: LptD Location: 54563-5712 5 bp Feature: gene Location: 57198-58412 bp Feature: domain Description: PRK10770 Location: 57210-58404 bp Feature: domain Description: PRK10770 Location: 572 10-58404 bp Feature: gene Location: 74668-76521 bp Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: gene Location: 76628-80365 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PAS Location: 78134-78659 bp Feature: domain Description: PAS Location: 78134-78659 bp Feature: domain Description: PRK10060 Location: 78671-80315 bp Feature: domain Description: PRK10060 Location: 78671-80315 bp Feature: gene Location: 81446-83131 bp Feature: domain Description: RVT_N Location: 81503-81743 bp Feature: domain Description: RVT_N Location: 81503-81743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82 42 7 bp Feature: domain Description: GIIM Note: maturase Location: 82481-82712 bp Feature: domain Description: GIIM Note: maturase Location: 82 481-82 712 bp Feature: domain Description: HNH Note: nucleases Location: 82964-83102 bp Feature: domain Description: HNH Note: nucleases Location: 82 964-83102 bp Feature: gene Location: 83854-84975 bp Feature: domain Description: COG3177 Location: 83872-84964 bp Feature: domain Description: COG3177 Location: 83872 -84964 bp Feature: gene Location: 85188-85403 bp Feature: domain Description: NERD Location: 85215-85338 bp Feature: domain Description: NERD Location: 852 15-85338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: MCMZ01000002.1 (691281 bp)
Overview 1 RT 1: 34867-43039 bp Neighborhood of RT #1 [34867, 43233] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 34867-36738 bp Feature: domain Description: DUF262 Location: 34915-35683 bp Feature: domain Description: DUF262 Location: 3 4915-3 5683 bp Feature: gene Location: 36742-38523 bp Feature: domain Description: YeeA Location: 37609-38389 bp Feature: domain Description: YeeA Location: 3 7609-3 83 89 bp Feature: gene Location: 38520-41540 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 39015-39486 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 9015-3 9486 bp Feature: gene Location: 41537-41989 bp Feature: gene Location: 42094-43233 bp Feature: domain Description: AAA_21 Location: 42166-42235 bp Feature: domain Description: AAA_21 Location: 42166-4223 5 bp Feature: domain Description: AAA_21 Location: 42709-43039 bp Feature: domain Description: AAA_21 Location: 42709-43 03 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)