myRT

myRT report for GCA_003704235.1_ASM370423v1

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Seq: RCIU01000055.1 (20175 bp)
Overview 1 RT 1: 2-3892 bp Neighborhood of RT #1 [2, 3987] RVT_N RVT-GII GIIM HNHc ACD_LpsHSP_like DDE_Tnp_1_3 Feature: gene Location: 2-142 bp Feature: gene Location: 335-2017 bp Feature: domain Description: RVT_N Location: 365-611 bp Feature: domain Description: RVT_N Location: 365-61 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653-1358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653-1 358 bp Feature: domain Description: GIIM Note: maturase Location: 1457-1664 bp Feature: domain Description: GIIM Note: maturase Location: 1 457-1 664 bp Feature: domain Description: HNHc Note: nucleases Location: 1853-2003 bp Feature: domain Description: HNHc Note: nucleases Location: 1 853-2003 bp Feature: gene Location: 2493-2882 bp Feature: domain Description: ACD_LpsHSP_like Location: 2586-2844 bp Feature: domain Description: ACD_LpsHSP_like Location: 2586-2844 bp Feature: gene Location: 3394-3987 bp Feature: domain Description: DDE_Tnp_1_3 Location: 3436-3892 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 3436-3892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000068.1 (124604 bp)
Overview 1 RT 1: 105030-109125 bp Neighborhood of RT #1 [105030, 109247] Ank_2 RVT_N RVT-GII GIIM HNHc ANK Ank_5 DUF2207 Feature: gene Location: 105030-105158 bp Feature: gene Location: 105365-105715 bp Feature: domain Description: Ank_2 Location: 105404-105605 bp Feature: domain Description: Ank_2 Location: 105404-105605 bp Feature: gene Location: 105871-107553 bp Feature: domain Description: RVT_N Location: 105901-106147 bp Feature: domain Description: RVT_N Location: 105901-106147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106189-106894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106189-106894 bp Feature: domain Description: GIIM Note: maturase Location: 106993-107200 bp Feature: domain Description: GIIM Note: maturase Location: 106993-1072 00 bp Feature: domain Description: HNHc Note: nucleases Location: 107389-107539 bp Feature: domain Description: HNHc Note: nucleases Location: 107389-107539 bp Feature: gene Location: 108055-108480 bp Feature: domain Description: ANK Location: 108115-108325 bp Feature: domain Description: ANK Location: 108115-10832 5 bp Feature: domain Description: Ank_5 Location: 108340-108463 bp Feature: domain Description: Ank_5 Location: 108340-108463 bp Feature: gene Location: 108669-109247 bp Feature: domain Description: DUF2207 Location: 108747-109125 bp Feature: domain Description: DUF2 2 07 Location: 108747-10912 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000012.1 (105760 bp)
Overview 1 RT 1: 89027-94058 bp 2 RT 2: 97374-102092 bp Neighborhood of RT #1 [89027, 94072] PqqL RVT-GII GIIM RVT-GII apaG PRK06019 Neighborhood of RT #2 [97374, 102142] PHA02518 Ank_4 Ank_4 Ank_4 Ank_4 RVT-GII GIIM PDDEXK_2 COG3547 Feature: gene Location: 89027-90346 bp Feature: domain Description: PqqL Location: 89102-90335 bp Feature: domain Description: PqqL Location: 89102-903 3 5 bp Feature: gene Location: 90333-90740 bp Feature: gene Location: 90737-91531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90740-91145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90740-91145 bp Feature: domain Description: GIIM Note: maturase Location: 91229-91448 bp Feature: domain Description: GIIM Note: maturase Location: 91229-91448 bp Feature: gene Location: 91630-91992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91843-91954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91843 -91954 bp Feature: gene Location: 92507-92908 bp Feature: domain Description: apaG Location: 92525-92891 bp Feature: domain Description: apaG Location: 92525-92891 bp Feature: gene Location: 93005-94072 bp Feature: domain Description: PRK06019 Location: 93032-94058 bp Feature: domain Description: PRK06019 Location: 93 03 2-94058 bp Feature: gene Location: 97374-97556 bp Feature: domain Description: PHA02518 Location: 97419-97542 bp Feature: domain Description: PHA02518 Location: 97419-97542 bp Feature: gene Location: 97705-98553 bp Feature: domain Description: Ank_4 Location: 97795-97900 bp Feature: domain Description: Ank_4 Location: 97795-97900 bp Feature: domain Description: Ank_4 Location: 97945-98101 bp Feature: domain Description: Ank_4 Location: 97945-98101 bp Feature: domain Description: Ank_4 Location: 98146-98302 bp Feature: domain Description: Ank_4 Location: 98146-983 02 bp Feature: domain Description: Ank_4 Location: 98344-98494 bp Feature: domain Description: Ank_4 Location: 983 44-98494 bp Feature: gene Location: 99313-100563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99520-100177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99520-100177 bp Feature: domain Description: GIIM Note: maturase Location: 100261-100480 bp Feature: domain Description: GIIM Note: maturase Location: 100261-100480 bp Feature: gene Location: 100560-101108 bp Feature: domain Description: PDDEXK_2 Location: 100650-100875 bp Feature: domain Description: PDDEXK_2 Location: 100650-100875 bp Feature: gene Location: 101129-102142 bp Feature: domain Description: COG3547 Location: 101147-102092 bp Feature: domain Description: COG3 547 Location: 101147-102092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000040.1 (58640 bp)
Overview 1 RT 1: 24295-32264 bp Neighborhood of RT #1 [24295, 32275] EmrE T_den_put_tspse T_den_put_tspse RVT_N RVT-GII YkfC PRK05218 Feature: gene Location: 24295-24639 bp Feature: domain Description: EmrE Location: 24298-24607 bp Feature: domain Description: EmrE Location: 24 298-24 607 bp Feature: gene Location: 24750-25538 bp Feature: domain Description: T_den_put_tspse Location: 24876-25380 bp Feature: domain Description: T_den_put_tspse Location: 24 876-25380 bp Feature: domain Description: T_den_put_tspse Location: 25386-25530 bp Feature: domain Description: T_den_put_tspse Location: 25386-25530 bp Feature: gene Location: 25535-27082 bp Feature: domain Description: RVT_N Location: 25586-25829 bp Feature: domain Description: RVT_N Location: 25586-25829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25874-26525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25874 -26525 bp Feature: domain Description: YkfC Location: 26525-26858 bp Feature: domain Description: YkfC Location: 26525-26858 bp Feature: gene Location: 27472-31152 bp Feature: gene Location: 31190-32275 bp Feature: domain Description: PRK05218 Location: 31193-32264 bp Feature: domain Description: PRK05218 Location: 31193-32264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000003.1 (59725 bp)
Overview 1 RT 1: 23876-31539 bp Neighborhood of RT #1 [23876, 31589] PDDEXK_2 RVT-GII GIIM RVT-GII PqqL lspA RVT-GII GIIM PqqL PRK14775 Feature: gene Location: 23876-24196 bp Feature: gene Location: 24363-25046 bp Feature: domain Description: PDDEXK_2 Location: 24453-25032 bp Feature: domain Description: PDDEXK_2 Location: 2445 3-25 032 bp Feature: gene Location: 25043-25837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25046-25451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 046-25 45 1 bp Feature: domain Description: GIIM Note: maturase Location: 25535-25754 bp Feature: domain Description: GIIM Note: maturase Location: 25 5 35 -25 75 4 bp Feature: gene Location: 25936-26298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26149-26269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26149-26269 bp Feature: gene Location: 26813-27844 bp Feature: domain Description: PqqL Location: 26888-27791 bp Feature: domain Description: PqqL Location: 26888-27791 bp Feature: gene Location: 27874-28140 bp Feature: domain Description: lspA Location: 27895-28102 bp Feature: domain Description: lspA Location: 27895 -28102 bp Feature: gene Location: 28137-29393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28350-29007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2835 0-29007 bp Feature: domain Description: GIIM Note: maturase Location: 29091-29310 bp Feature: domain Description: GIIM Note: maturase Location: 29091-29310 bp Feature: gene Location: 29908-30939 bp Feature: domain Description: PqqL Location: 29983-30886 bp Feature: domain Description: PqqL Location: 29983-30886 bp Feature: gene Location: 30969-31589 bp Feature: domain Description: PRK14775 Location: 31125-31539 bp Feature: domain Description: PRK14775 Location: 31125 -315 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000023.1 (123670 bp)
Overview 1 RT 1: 52044-59347 bp 2 RT 2: 72887-78890 bp 3 RT 3: 84352-86702 bp Neighborhood of RT #1 [52044, 59397] ANK PRK09604 RVT-GII GIIM RVT-GII GIIM RVT-GII PqqL PRK14775 Neighborhood of RT #2 [72887, 78904] PDDEXK_2 RVT-GII GIIM GIY-YIG_unchar_3 ArpD ArpD Neighborhood of RT #3 [84352, 86702] IS285 RVT_N RVT-GII RVT_N Feature: gene Location: 52044-53261 bp Feature: domain Description: ANK Location: 52266-52599 bp Feature: domain Description: ANK Location: 5226 6 -52599 bp Feature: gene Location: 53610-54617 bp Feature: domain Description: PRK09604 Location: 53619-54612 bp Feature: domain Description: PRK096 04 Location: 536 19-546 12 bp Feature: gene Location: 54913-55548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54916-55162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54916 -5516 2 bp Feature: domain Description: GIIM Note: maturase Location: 55246-55465 bp Feature: domain Description: GIIM Note: maturase Location: 55246 -5546 5 bp Feature: gene Location: 56090-56884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56093-56498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56 093-56 498 bp Feature: domain Description: GIIM Note: maturase Location: 56582-56801 bp Feature: domain Description: GIIM Note: maturase Location: 56 582-56 801 bp Feature: gene Location: 56983-57345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57196-57316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57196 -57316 bp Feature: gene Location: 57860-58891 bp Feature: domain Description: PqqL Location: 57935-58838 bp Feature: domain Description: PqqL Location: 57935-58838 bp Feature: gene Location: 58921-59397 bp Feature: domain Description: PRK14775 Location: 58933-59347 bp Feature: domain Description: PRK14775 Location: 58933-59347 bp Feature: gene Location: 72887-73207 bp Feature: gene Location: 73374-74057 bp Feature: domain Description: PDDEXK_2 Location: 73464-74043 bp Feature: domain Description: PDDEXK_2 Location: 7346 4-74043 bp Feature: gene Location: 74054-75310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74267-74924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7426 7-74924 bp Feature: domain Description: GIIM Note: maturase Location: 75008-75227 bp Feature: domain Description: GIIM Note: maturase Location: 75008-75227 bp Feature: gene Location: 75822-76049 bp Feature: domain Description: GIY-YIG_unchar_3 Location: 75840-76005 bp Feature: domain Description: GIY-YIG_unchar_3 Location: 75840-76 005 bp Feature: gene Location: 76325-78904 bp Feature: domain Description: ArpD Location: 76358-77801 bp Feature: domain Description: ArpD Location: 76 358-77801 bp Feature: domain Description: ArpD Location: 77804-78890 bp Feature: domain Description: ArpD Location: 77804-78890 bp Feature: gene Location: 84352-84489 bp Feature: gene Location: 84628-84894 bp Feature: domain Description: IS285 Location: 84727-84886 bp Feature: domain Description: IS285 Location: 84727-84886 bp Feature: gene Location: 84926-85555 bp Feature: domain Description: RVT_N Location: 84932-85130 bp Feature: domain Description: RVT_N Location: 84932-85130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85178-85517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85178-85517 bp Feature: gene Location: 86069-86521 bp Feature: domain Description: RVT_N Location: 86120-86291 bp Feature: domain Description: RVT_N Location: 86 120-86 291 bp Feature: gene Location: 86559-86702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000022.1 (76897 bp)
Overview 1 RT 1: 1033-5052 bp 2 RT 2: 42729-48357 bp Neighborhood of RT #1 [1033, 5198] RVT-GII GIIM PheRS_DBD2 PheRS_DBD2 PheRS_DBD2 PheRS_DBD2 PheRS_DBD2 PheRS_DBD2 Neighborhood of RT #2 [42729, 48431] PRK00048 PRK14244 RVT-GII GIIM PDDEXK_2 RmuC Feature: gene Location: 1033-1488 bp Feature: gene Location: 1957-2385 bp Feature: gene Location: 2900-4156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3113-3770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3113-37 7 0 bp Feature: domain Description: GIIM Note: maturase Location: 3854-4073 bp Feature: domain Description: GIIM Note: maturase Location: 3854-407 3 bp Feature: gene Location: 4153-4392 bp Feature: gene Location: 4479-5198 bp Feature: domain Description: PheRS_DBD2 Location: 4662-4695 bp Feature: domain Description: PheRS_DBD2 Location: 4662-4695 bp Feature: domain Description: PheRS_DBD2 Location: 4710-4743 bp Feature: domain Description: PheRS_DBD2 Location: 47 10-47 43 bp Feature: domain Description: PheRS_DBD2 Location: 4803-4839 bp Feature: domain Description: PheRS_DBD2 Location: 4803-4839 bp Feature: domain Description: PheRS_DBD2 Location: 4926-4959 bp Feature: domain Description: PheRS_DBD2 Location: 4926-4959 bp Feature: domain Description: PheRS_DBD2 Location: 4971-5007 bp Feature: domain Description: PheRS_DBD2 Location: 497 1-5007 bp Feature: domain Description: PheRS_DBD2 Location: 5019-5052 bp Feature: domain Description: PheRS_DBD2 Location: 5019-5052 bp Feature: gene Location: 42729-43514 bp Feature: domain Description: PRK00048 Location: 42735-43512 bp Feature: domain Description: PRK00048 Location: 427 35-43512 bp Feature: gene Location: 43586-44269 bp Feature: domain Description: PRK14244 Location: 43589-44267 bp Feature: domain Description: PRK14244 Location: 43589-44267 bp Feature: gene Location: 44960-46216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45173-45830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4517 3-45830 bp Feature: domain Description: GIIM Note: maturase Location: 45914-46133 bp Feature: domain Description: GIIM Note: maturase Location: 45914-46133 bp Feature: gene Location: 46213-47163 bp Feature: domain Description: PDDEXK_2 Location: 46303-46978 bp Feature: domain Description: PDDEXK_2 Location: 46303-4697 8 bp Feature: gene Location: 47175-48431 bp Feature: domain Description: RmuC Location: 47502-48357 bp Feature: domain Description: RmuC Location: 47 502-48357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000031.1 (69975 bp)
Overview 1 RT 1: 3119-12668 bp Neighborhood of RT #1 [3119, 12668] RVT_N RVT-GII RVT_N RVT-GII YkfC ANK PDDEXK_2 RVT_N RVT-GII GIIM T_den_put_tspse Feature: gene Location: 3119-3334 bp Feature: gene Location: 3589-3732 bp Feature: gene Location: 3770-4420 bp Feature: domain Description: RVT_N Location: 3821-4064 bp Feature: domain Description: RVT_N Location: 38 21-4064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-4418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4109-4418 bp Feature: gene Location: 4675-4818 bp Feature: gene Location: 4856-6403 bp Feature: domain Description: RVT_N Location: 4907-5150 bp Feature: domain Description: RVT_N Location: 4907-5150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5195-5846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5195-58 46 bp Feature: domain Description: YkfC Location: 5846-6179 bp Feature: domain Description: YkfC Location: 58 46-6179 bp Feature: gene Location: 6537-7748 bp Feature: domain Description: ANK Location: 6882-7293 bp Feature: domain Description: ANK Location: 68 8 2-7293 bp Feature: gene Location: 8179-8514 bp Feature: gene Location: 8915-9358 bp Feature: domain Description: PDDEXK_2 Location: 8942-9161 bp Feature: domain Description: PDDEXK_2 Location: 8 942-9161 bp Feature: gene Location: 9794-11266 bp Feature: domain Description: RVT_N Location: 9845-10088 bp Feature: domain Description: RVT_N Location: 98 45-1008 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10133-10784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10133-1078 4 bp Feature: domain Description: GIIM Note: maturase Location: 10835-11069 bp Feature: domain Description: GIIM Note: maturase Location: 108 35-11069 bp Feature: gene Location: 11338-12123 bp Feature: domain Description: T_den_put_tspse Location: 11464-12115 bp Feature: domain Description: T_den_put_tspse Location: 11464-12115 bp Feature: gene Location: 12144-12668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: RCIU01000009.1 (104167 bp)
Overview 1 RT 1: 1854-8493 bp 2 RT 2: 11552-14885 bp Neighborhood of RT #1 [1854, 8624] PRK11713 RVT_N RVT-GII GIIM HNHc ANK ANK ANK ANK PulD pilus_MshL Neighborhood of RT #2 [11552, 14911] RVT_N RVT-GII GIIM HNHc DapF Nitroreductase_2 Feature: gene Location: 1854-2498 bp Feature: domain Description: PRK11713 Location: 1866-2490 bp Feature: domain Description: PRK11713 Location: 1866-249 0 bp Feature: gene Location: 2706-2846 bp Feature: gene Location: 2974-4656 bp Feature: domain Description: RVT_N Location: 3004-3250 bp Feature: domain Description: RVT_N Location: 3004-3250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3292-3997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329 2-39 9 7 bp Feature: domain Description: GIIM Note: maturase Location: 4096-4303 bp Feature: domain Description: GIIM Note: maturase Location: 409 6-4303 bp Feature: domain Description: HNHc Note: nucleases Location: 4492-4642 bp Feature: domain Description: HNHc Note: nucleases Location: 449 2-4642 bp Feature: gene Location: 5685-7040 bp Feature: domain Description: ANK Location: 5697-5922 bp Feature: domain Description: ANK Location: 569 7-59 22 bp Feature: domain Description: ANK Location: 5931-6192 bp Feature: domain Description: ANK Location: 59 31-619 2 bp Feature: domain Description: ANK Location: 6207-6456 bp Feature: domain Description: ANK Location: 6207-6456 bp Feature: domain Description: ANK Location: 6483-6825 bp Feature: domain Description: ANK Location: 6483-6825 bp Feature: gene Location: 7164-8624 bp Feature: domain Description: PulD Location: 7392-7584 bp Feature: domain Description: PulD Location: 739 2-7584 bp Feature: domain Description: pilus_MshL Location: 7800-8493 bp Feature: domain Description: pilus_MshL Location: 7800-849 3 bp Feature: gene Location: 11552-11776 bp Feature: gene Location: 11984-12124 bp Feature: gene Location: 12252-13934 bp Feature: domain Description: RVT_N Location: 12282-12528 bp Feature: domain Description: RVT_N Location: 12282-12528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12570-13275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12570-13275 bp Feature: domain Description: GIIM Note: maturase Location: 13374-13581 bp Feature: domain Description: GIIM Note: maturase Location: 13374-13581 bp Feature: domain Description: HNHc Note: nucleases Location: 13770-13920 bp Feature: domain Description: HNHc Note: nucleases Location: 13770-139 20 bp Feature: gene Location: 13975-14346 bp Feature: domain Description: DapF Location: 14002-14281 bp Feature: domain Description: DapF Location: 14002-14281 bp Feature: gene Location: 14324-14911 bp Feature: domain Description: Nitroreductase_2 Location: 14366-14885 bp Feature: domain Description: Nitroreductase_2 Location: 14366-14885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT