myRT

myRT report for GCA_003732275.1_ASM373227v1

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Seq: MOBM01000004.1 (197228 bp)
Overview 1 RT 1: 97503-102177 bp Neighborhood of RT #1 [97503, 102332] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM HNHc DDE_Tnp_IS66_C COG0645 Feature: gene Location: 97503-97838 bp Feature: domain Description: TnpB_IS66 Location: 97521-97809 bp Feature: domain Description: TnpB_IS66 Location: 97521 -97809 bp Feature: gene Location: 97967-99361 bp Feature: domain Description: LZ_Tnp_IS66 Location: 98048-98261 bp Feature: domain Description: LZ_Tnp_IS66 Location: 98048-98261 bp Feature: domain Description: zf-IS66 Location: 98288-98414 bp Feature: domain Description: zf-IS66 Location: 98288-9841 4 bp Feature: domain Description: DDE_Tnp_IS66 Location: 98456-99230 bp Feature: domain Description: DDE_Tnp_IS66 Location: 98456-99230 bp Feature: gene Location: 99807-101468 bp Feature: domain Description: RVT_N Location: 99852-100095 bp Feature: domain Description: RVT_N Location: 99852-1 00095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100140-100776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 40-1 00776 bp Feature: domain Description: GIIM Note: maturase Location: 100830-101061 bp Feature: domain Description: GIIM Note: maturase Location: 1 00830-1 01 061 bp Feature: domain Description: HNHc Note: nucleases Location: 101289-101430 bp Feature: domain Description: HNHc Note: nucleases Location: 1 01 289-1 01 430 bp Feature: gene Location: 101660-101803 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 101666-101777 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 01 666-1 01 777 bp Feature: gene Location: 101826-102332 bp Feature: domain Description: COG0645 Location: 101829-102177 bp Feature: domain Description: COG0645 Location: 1 01 829-1 021 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_IS66_C (pfam13817), COG0645 (Predicted kinase )

Seq: MOBM01000017.1 (113184 bp)
Overview 1 RT 1: 11937-15716 bp Neighborhood of RT #1 [11937, 15739] COG3436 RVT-GII GIIM DDE_Tnp_IS66_C Cupin_6 AraC Feature: gene Location: 11937-12077 bp Feature: gene Location: 12329-12814 bp Feature: domain Description: COG3436 Location: 12374-12566 bp Feature: domain Description: COG3436 Location: 12 374-12 566 bp Feature: gene Location: 13219-14520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13492-14143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13492 -14143 bp Feature: domain Description: GIIM Note: maturase Location: 14221-14425 bp Feature: domain Description: GIIM Note: maturase Location: 142 2 1-1442 5 bp Feature: gene Location: 14642-14809 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14648-14759 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 14648-14759 bp Feature: gene Location: 14819-15739 bp Feature: domain Description: Cupin_6 Location: 14825-15359 bp Feature: domain Description: Cupin_6 Location: 1482 5-15359 bp Feature: domain Description: AraC Location: 15365-15716 bp Feature: domain Description: AraC Location: 15365-15716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), Cupin_6 (pfam12852), AraC (COG2207)

Seq: MOBM01000020.1 (255331 bp)
Overview 1 RT 1: 3408-8541 bp Neighborhood of RT #1 [3408, 8576] YcjR MhpC RVT-GII Acetyltransf_10 BLMA_like Feature: gene Location: 3408-4487 bp Feature: domain Description: YcjR Location: 3438-4380 bp Feature: domain Description: YcjR Location: 3 43 8-43 80 bp Feature: gene Location: 4490-5380 bp Feature: domain Description: MhpC Location: 4541-5363 bp Feature: domain Description: MhpC Location: 4541-53 63 bp Feature: gene Location: 5635-7401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6319-7009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 19-7009 bp Feature: gene Location: 7564-8040 bp Feature: domain Description: Acetyltransf_10 Location: 7717-8017 bp Feature: domain Description: Acetyltransf_10 Location: 7717-8017 bp Feature: gene Location: 8145-8576 bp Feature: domain Description: BLMA_like Location: 8169-8541 bp Feature: domain Description: BLMA_like Location: 8169-8541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcjR (COG1082), MhpC (COG0596), RVT-GII, Acetyltransf_10 (pfam13673), BLMA_like (cd08349)

Seq: MOBM01000002.1 (260611 bp)
Overview 1 RT 1: 210229-218310 bp Neighborhood of RT #1 [210229, 218318] RVT-UG1 HsdR HsdR Feature: gene Location: 210229-210561 bp Feature: gene Location: 210884-211576 bp Feature: gene Location: 211935-215786 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 212595-213144 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 212595-21314 4 bp Feature: gene Location: 215831-215998 bp Feature: gene Location: 215952-218318 bp Feature: domain Description: HsdR Location: 215961-217584 bp Feature: domain Description: HsdR Location: 215961-217584 bp Feature: domain Description: HsdR Location: 217779-218310 bp Feature: domain Description: HsdR Location: 217779-218310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, HsdR (COG4096)