myRT

myRT report for GCA_003751085.1_ASM375108v1

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Seq: RJJY01000001.1 (6230195 bp)
Overview 1 RT 1: 3-3694 bp 2 RT 2: 871813-879089 bp 3 RT 3: 888374-893709 bp 4 RT 4: 1070689-1075132 bp 5 RT 5: 1673822-1679865 bp 6 RT 6: 1739968-1749273 bp 7 RT 7: 1761010-1770382 bp 8 RT 8: 2478381-2485224 bp 9 RT 9: 2497923-2504580 bp 10 RT 10: 2525348-2532172 bp 11 RT 11: 2649819-2656827 bp 12 RT 12: 2774019-2779812 bp 13 RT 13: 3668256-3672186 bp 14 RT 14: 3942601-3951618 bp 15 RT 15: 5501149-5507287 bp 16 RT 16: 5641433-5646612 bp Neighborhood of RT #1 [3, 3753] RVT-GII Intron_maturas2 DDE_Tnp_1_4 HTH_3 Cupin_2 Neighborhood of RT #2 [871813, 879526] PRK05755 Tra8 RVT-GII GIIM MTAN Neighborhood of RT #3 [888374, 893915] HTH_32 DDE_3 RVT_N RVT-GII GIIM CHAT AAA_16 Neighborhood of RT #4 [1070689, 1075326] DDE_3 RVT_N RVT-GII GIIM Glyco_10 Neighborhood of RT #5 [1673822, 1679870] DDE_Tnp_1_4 RVT-GII Intron_maturas2 DDE_Tnp_1_4 MviM Neighborhood of RT #6 [1739968, 1749290] Resolvase Recombinase Zn_ribbon_recom DDE_Tnp_1_4 RVT-GII Intron_maturas2 DDE_Tnp_1_4 RVT-GII IS285 Neighborhood of RT #7 [1761010, 1770405] DUF772 DDE_Tnp_1_6 RVT-GII COG5421 RVT-GII GIIM M28_like GrsT Neighborhood of RT #8 [2478381, 2485304] methyltran_FxLD RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 GPP34 Neighborhood of RT #9 [2497923, 2504588] Mrr_cat HemC RVT_N RVT-GII GIIM PHA02517 InsE Neighborhood of RT #10 [2525348, 2532228] DUF4365 RVT_N RVT-GII GIIM DDE_Tnp_1_4 HTH_32 DDE_3 Neighborhood of RT #11 [2649819, 2656844] DDE_Tnp_1_4 DDE_Tnp_1_4 RVT-GII Intron_maturas2 DDE_Tnp_1_4 IS285 Neighborhood of RT #12 [2774019, 2779812] TIGR02452 RVT-GII RVT-GII GIIM Neighborhood of RT #13 [3668256, 3672293] DUF397 RVT-CRISPR-like PhdYeFM_antitox ABC2_membrane Neighborhood of RT #14 [3942601, 3952262] HTH_32 DDE_3 RVT_N RVT-GII GIIM DUF4255 RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 DDE_5 Neighborhood of RT #15 [5501149, 5507287] Zn_ADH_class_III HomoserineK_II RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 Neighborhood of RT #16 [5641433, 5646612] GGDEF RVT_N RVT-GII GIIM HTH_ARSR Feature: gene Location: 3-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87-882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87-882 bp Feature: domain Description: Intron_maturas2 Location: 984-1215 bp Feature: domain Description: Intron_maturas2 Location: 984-1 21 5 bp Feature: gene Location: 2052-2789 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2058-2634 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 2058-2634 bp Feature: gene Location: 3160-3753 bp Feature: domain Description: HTH_3 Location: 3208-3370 bp Feature: domain Description: HTH_3 Location: 3208-3370 bp Feature: domain Description: Cupin_2 Location: 3511-3694 bp Feature: domain Description: Cupin_2 Location: 351 1 -3694 bp Feature: gene Location: 871813-872709 bp Feature: domain Description: PRK05755 Location: 871873-872647 bp Feature: domain Description: PRK05755 Location: 871 873-872647 bp Feature: gene Location: 873261-874112 bp Feature: domain Description: Tra8 Location: 873267-874098 bp Feature: domain Description: Tra8 Location: 873267-874098 bp Feature: gene Location: 874942-876204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875158-875815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8751 58-87581 5 bp Feature: domain Description: GIIM Note: maturase Location: 875896-876121 bp Feature: domain Description: GIIM Note: maturase Location: 875896-8761 21 bp Feature: gene Location: 876369-878186 bp Feature: gene Location: 878375-879526 bp Feature: domain Description: MTAN Location: 878390-879089 bp Feature: domain Description: MTAN Location: 878390-879089 bp Feature: gene Location: 888374-888790 bp Feature: gene Location: 888668-889798 bp Feature: domain Description: HTH_32 Location: 889019-889250 bp Feature: domain Description: HTH_32 Location: 88901 9-889250 bp Feature: domain Description: DDE_3 Location: 889376-889742 bp Feature: domain Description: DDE_3 Location: 889376-889742 bp Feature: gene Location: 890424-892211 bp Feature: domain Description: RVT_N Location: 890499-890736 bp Feature: domain Description: RVT_N Location: 890499-890736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890796-891453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890796-891 453 bp Feature: domain Description: GIIM Note: maturase Location: 891507-891741 bp Feature: domain Description: GIIM Note: maturase Location: 891 507-891 741 bp Feature: gene Location: 892037-892447 bp Feature: gene Location: 892452-893915 bp Feature: domain Description: CHAT Location: 892836-893337 bp Feature: domain Description: CHAT Location: 892836-893337 bp Feature: domain Description: AAA_16 Location: 893496-893709 bp Feature: domain Description: AAA_1 6 Location: 893496-893709 bp Feature: gene Location: 1070689-1070829 bp Feature: gene Location: 1070949-1071311 bp Feature: domain Description: DDE_3 Location: 1070958-1071255 bp Feature: domain Description: DDE_3 Location: 1 070958-1 071 255 bp Feature: gene Location: 1071937-1073724 bp Feature: domain Description: RVT_N Location: 1072012-1072249 bp Feature: domain Description: RVT_N Location: 1 07201 2-1 072249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072309-1072966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 072309-1 072966 bp Feature: domain Description: GIIM Note: maturase Location: 1073020-1073254 bp Feature: domain Description: GIIM Note: maturase Location: 1 073020-1 073254 bp Feature: gene Location: 1073550-1074059 bp Feature: gene Location: 1074052-1075326 bp Feature: domain Description: Glyco_10 Location: 1074325-1075132 bp Feature: domain Description: Glyco_1 0 Location: 1 074325-1 0751 32 bp Feature: gene Location: 1673822-1674835 bp Feature: gene Location: 1675160-1675972 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1675208-1675958 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 675208-1 675958 bp Feature: gene Location: 1676051-1677664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1676135-1676930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6761 35-1 676930 bp Feature: domain Description: Intron_maturas2 Location: 1677032-1677263 bp Feature: domain Description: Intron_maturas2 Location: 1 677032-1 677263 bp Feature: gene Location: 1678229-1678966 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1678235-1678811 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 678235-1 67881 1 bp Feature: gene Location: 1679115-1679870 bp Feature: domain Description: MviM Location: 1679202-1679865 bp Feature: domain Description: MviM Location: 1 679202-1 679865 bp Feature: gene Location: 1739968-1741977 bp Feature: domain Description: Resolvase Location: 1739980-1740418 bp Feature: domain Description: Resolvase Location: 1 739980-1 74041 8 bp Feature: domain Description: Recombinase Location: 1740511-1740862 bp Feature: domain Description: Recombinase Location: 1 74051 1 -1 740862 bp Feature: domain Description: Zn_ribbon_recom Location: 1740910-1741102 bp Feature: domain Description: Zn_ribbon_recom Location: 1 74091 0-1 741 1 02 bp Feature: gene Location: 1742302-1743039 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1742308-1742884 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 742308-1 742884 bp Feature: gene Location: 1743604-1745217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1743688-1744483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 743688-1 744483 bp Feature: domain Description: Intron_maturas2 Location: 1744585-1744816 bp Feature: domain Description: Intron_maturas2 Location: 1 744585-1 74481 6 bp Feature: gene Location: 1745296-1746108 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1745344-1746094 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 745344-1 746094 bp Feature: gene Location: 1746232-1746552 bp Feature: gene Location: 1746319-1747140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1746649-1746988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 746649-1 746988 bp Feature: gene Location: 1747277-1747525 bp Feature: gene Location: 1747998-1749290 bp Feature: domain Description: IS285 Location: 1748121-1749273 bp Feature: domain Description: IS285 Location: 1 7481 21 -1 749273 bp Feature: gene Location: 1761010-1762383 bp Feature: domain Description: DUF772 Location: 1761118-1761331 bp Feature: domain Description: DUF772 Location: 1 761 1 1 8-1 761 331 bp Feature: gene Location: 1762136-1762666 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1762226-1762586 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 762226-1 762586 bp Feature: gene Location: 1763032-1763559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763134-1763527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7631 34-1 763527 bp Feature: gene Location: 1763739-1763981 bp Feature: gene Location: 1764686-1765042 bp Feature: gene Location: 1765339-1766922 bp Feature: domain Description: COG5421 Location: 1765555-1766719 bp Feature: domain Description: COG5421 Location: 1 765555-1 76671 9 bp Feature: gene Location: 1767233-1767631 bp Feature: gene Location: 1767531-1768256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1767537-1767834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 767537-1 767834 bp Feature: domain Description: GIIM Note: maturase Location: 1767906-1768128 bp Feature: domain Description: GIIM Note: maturase Location: 1 767906-1 7681 28 bp Feature: gene Location: 1768387-1769586 bp Feature: domain Description: M28_like Location: 1768726-1769563 bp Feature: domain Description: M28_like Location: 1 768726-1 769563 bp Feature: gene Location: 1769632-1770405 bp Feature: domain Description: GrsT Location: 1769686-1770382 bp Feature: domain Description: GrsT Location: 1 769686-1 770382 bp Feature: gene Location: 2478381-2479619 bp Feature: domain Description: methyltran_FxLD Location: 2478414-2479608 bp Feature: domain Description: methyltran_FxLD Location: 247841 4-2479608 bp Feature: gene Location: 2479927-2480247 bp Feature: gene Location: 2480814-2482073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2481030-2481684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2481 030-2481 684 bp Feature: domain Description: GIIM Note: maturase Location: 2481768-2481990 bp Feature: domain Description: GIIM Note: maturase Location: 2481 768-2481 990 bp Feature: gene Location: 2482856-2484139 bp Feature: domain Description: Nterm_IS4 Location: 2482859-2483120 bp Feature: domain Description: Nterm_IS4 Location: 2482859-24831 20 bp Feature: domain Description: DDE_Tnp_1 Location: 2483180-2483819 bp Feature: domain Description: DDE_Tnp_1 Location: 24831 80-248381 9 bp Feature: gene Location: 2484312-2485304 bp Feature: domain Description: GPP34 Location: 2484690-2485224 bp Feature: domain Description: GPP34 Location: 2484690-2485224 bp Feature: gene Location: 2497923-2500037 bp Feature: domain Description: Mrr_cat Location: 2498757-2499078 bp Feature: domain Description: Mrr_cat Location: 2498757-2499078 bp Feature: gene Location: 2500240-2501004 bp Feature: domain Description: HemC Location: 2500342-2500996 bp Feature: domain Description: HemC Location: 2500342-2500996 bp Feature: gene Location: 2501015-2502784 bp Feature: domain Description: RVT_N Location: 2501078-2501315 bp Feature: domain Description: RVT_N Location: 2501 078-2501 31 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2501375-2502041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2501 375-2502041 bp Feature: domain Description: GIIM Note: maturase Location: 2502095-2502323 bp Feature: domain Description: GIIM Note: maturase Location: 2502095-2502323 bp Feature: gene Location: 2503405-2504289 bp Feature: domain Description: PHA02517 Location: 2503483-2504263 bp Feature: domain Description: PHA0251 7 Location: 2503483-2504263 bp Feature: gene Location: 2504295-2504588 bp Feature: domain Description: InsE Location: 2504310-2504580 bp Feature: domain Description: InsE Location: 250431 0-2504580 bp Feature: gene Location: 2525348-2526763 bp Feature: domain Description: DUF4365 Location: 2525360-2525726 bp Feature: domain Description: DUF4365 Location: 2525360-2525726 bp Feature: gene Location: 2527020-2527466 bp Feature: gene Location: 2527289-2528893 bp Feature: domain Description: RVT_N Location: 2527292-2527415 bp Feature: domain Description: RVT_N Location: 2527292-252741 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2527475-2528132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2527475-25281 32 bp Feature: domain Description: GIIM Note: maturase Location: 2528186-2528420 bp Feature: domain Description: GIIM Note: maturase Location: 25281 86-2528420 bp Feature: gene Location: 2529081-2530187 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2529102-2529990 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 25291 02-2529990 bp Feature: gene Location: 2531401-2532228 bp Feature: domain Description: HTH_32 Location: 2531449-2531683 bp Feature: domain Description: HTH_32 Location: 2531 449-2531 683 bp Feature: domain Description: DDE_3 Location: 2531806-2532172 bp Feature: domain Description: DDE_3 Location: 2531 806-25321 72 bp Feature: gene Location: 2649819-2651183 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2649825-2651175 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 2649825-2651 1 75 bp Feature: gene Location: 2651479-2652216 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2651485-2652061 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 2651 485-2652061 bp Feature: gene Location: 2653439-2654395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2653469-2653661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2653469-2653661 bp Feature: domain Description: Intron_maturas2 Location: 2653763-2653994 bp Feature: domain Description: Intron_maturas2 Location: 2653763-2653994 bp Feature: gene Location: 2654474-2655286 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2654522-2655272 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 2654522-2655272 bp Feature: gene Location: 2655552-2656844 bp Feature: domain Description: IS285 Location: 2655675-2656827 bp Feature: domain Description: IS285 Location: 2655675-2656827 bp Feature: gene Location: 2774019-2774855 bp Feature: domain Description: TIGR02452 Location: 2774043-2774802 bp Feature: domain Description: TIGR02452 Location: 2774043-2774802 bp Feature: gene Location: 2775142-2775651 bp Feature: gene Location: 2776050-2776802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776056-2776665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776056-2776665 bp Feature: gene Location: 2777545-2778159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2777563-2777770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2777563-2777770 bp Feature: domain Description: GIIM Note: maturase Location: 2777851-2778079 bp Feature: domain Description: GIIM Note: maturase Location: 2777851 -2778079 bp Feature: gene Location: 2779440-2779604 bp Feature: gene Location: 2779609-2779812 bp Feature: gene Location: 3668256-3668438 bp Feature: gene Location: 3668719-3668913 bp Feature: domain Description: DUF397 Location: 3668740-3668893 bp Feature: domain Description: DUF397 Location: 3668740-3668893 bp Feature: gene Location: 3668928-3670226 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3669153-3669747 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 36691 53-3669747 bp Feature: domain Description: PhdYeFM_antitox Location: 3669954-3670140 bp Feature: domain Description: PhdYeFM_antitox Location: 3669954-36701 40 bp Feature: gene Location: 3670652-3671395 bp Feature: gene Location: 3671430-3672293 bp Feature: domain Description: ABC2_membrane Location: 3671508-3672186 bp Feature: domain Description: ABC2_membrane Location: 3671 508-36721 86 bp Feature: gene Location: 3942601-3943017 bp Feature: gene Location: 3942895-3944025 bp Feature: domain Description: HTH_32 Location: 3943246-3943477 bp Feature: domain Description: HTH_32 Location: 3943246-3943477 bp Feature: domain Description: DDE_3 Location: 3943603-3943969 bp Feature: domain Description: DDE_3 Location: 3943603-3943969 bp Feature: gene Location: 3944651-3946438 bp Feature: domain Description: RVT_N Location: 3944726-3944963 bp Feature: domain Description: RVT_N Location: 3944726-3944963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945023-3945680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945023-3945680 bp Feature: domain Description: GIIM Note: maturase Location: 3945734-3945968 bp Feature: domain Description: GIIM Note: maturase Location: 3945734-3945968 bp Feature: gene Location: 3946264-3946674 bp Feature: gene Location: 3946737-3947330 bp Feature: domain Description: DUF4255 Location: 3946749-3947277 bp Feature: domain Description: DUF4255 Location: 3946749-3947277 bp Feature: gene Location: 3947427-3948686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3947643-3948297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3947643-3948297 bp Feature: domain Description: GIIM Note: maturase Location: 3948381-3948603 bp Feature: domain Description: GIIM Note: maturase Location: 3948381 -3948603 bp Feature: gene Location: 3949388-3950719 bp Feature: domain Description: Nterm_IS4 Location: 3949436-3949730 bp Feature: domain Description: Nterm_IS4 Location: 3949436-3949730 bp Feature: domain Description: DDE_Tnp_1 Location: 3949826-3950576 bp Feature: domain Description: DDE_Tnp_1 Location: 3949826-3950576 bp Feature: gene Location: 3950937-3952262 bp Feature: domain Description: DDE_5 Location: 3950970-3951618 bp Feature: domain Description: DDE_5 Location: 3950970-3951 61 8 bp Feature: gene Location: 5501149-5502234 bp Feature: domain Description: Zn_ADH_class_III Location: 5501164-5502226 bp Feature: domain Description: Zn_ADH_class_III Location: 5501 1 64-5502226 bp Feature: gene Location: 5502314-5503354 bp Feature: domain Description: HomoserineK_II Location: 5502359-5503304 bp Feature: domain Description: HomoserineK_II Location: 5502359-5503304 bp Feature: gene Location: 5503610-5504224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5503628-5503835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5503628-5503835 bp Feature: domain Description: GIIM Note: maturase Location: 5503916-5504144 bp Feature: domain Description: GIIM Note: maturase Location: 550391 6-55041 44 bp Feature: gene Location: 5505589-5506794 bp Feature: domain Description: Nterm_IS4 Location: 5505607-5505895 bp Feature: domain Description: Nterm_IS4 Location: 5505607-5505895 bp Feature: domain Description: DDE_Tnp_1 Location: 5505952-5506666 bp Feature: domain Description: DDE_Tnp_1 Location: 5505952-5506666 bp Feature: gene Location: 5507072-5507287 bp Feature: gene Location: 5641433-5641996 bp Feature: gene Location: 5642171-5642857 bp Feature: domain Description: GGDEF Location: 5642246-5642750 bp Feature: domain Description: GGDEF Location: 5642246-5642750 bp Feature: gene Location: 5643512-5645314 bp Feature: domain Description: RVT_N Location: 5643605-5643842 bp Feature: domain Description: RVT_N Location: 5643605-5643842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5643902-5644556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5643902-5644556 bp Feature: domain Description: GIIM Note: maturase Location: 5644607-5644841 bp Feature: domain Description: GIIM Note: maturase Location: 5644607-5644841 bp Feature: gene Location: 5645513-5646331 bp Feature: domain Description: HTH_ARSR Location: 5645573-5645729 bp Feature: domain Description: HTH_ARSR Location: 5645573-5645729 bp Feature: gene Location: 5646448-5646612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1_4 (pfam13701), HTH_3 (pfam01381), Cupin_2 (pfam07883), PRK05755 (DNA polymerase I; Provisional), Tra8 (COG2826), GIIM (pfam08388), MTAN (cd09008), HTH_32 (pfam13565)
DDE_3 (pfam13358), RVT_N (pfam13655), CHAT (pfam12770), AAA_16 (pfam13191), Glyco_10 (smart00633), MviM (COG0673), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), IS285 (COG3328)
DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), COG5421 (Transposase ), M28_like (cd08656), GrsT (COG3208), methyltran_FxLD (TIGR04364), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), GPP34 (pfam05719), Mrr_cat (pfam04471)
HemC (COG0181), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), DUF4365 (pfam14280), TIGR02452 (TIGR02452 family protein), DUF397 (pfam04149), RVT-CRISPR, PhdYeFM_antitox (pfam02604), ABC2_membrane (pfam01061), DUF4255 (pfam14065)
DDE_5 (pfam13546), Zn_ADH_class_III (cd08279), HomoserineK_II (cd05153), GGDEF (TIGR00254), HTH_ARSR (smart00418)

Seq: RJJY01000002.1 (2669580 bp)
Overview 1 RT 1: 873-4805 bp 2 RT 2: 636545-642034 bp 3 RT 3: 651458-654566 bp 4 RT 4: 1430383-1436600 bp 5 RT 5: 1550784-1557438 bp 6 RT 6: 1682712-1690389 bp 7 RT 7: 2336857-2342224 bp 8 RT 8: 2392978-2398363 bp Neighborhood of RT #1 [873, 4813] RVT-GII Intron_maturas2 DDE_Tnp_1_4 DDE_Tnp_1_4 Neighborhood of RT #2 [636545, 642034] RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 Neighborhood of RT #3 [651458, 654586] YfmG RVT-CRISPR-like NrdG PTPS Neighborhood of RT #4 [1430383, 1436600] Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM DDE_Tnp_1_4 Neighborhood of RT #5 [1550784, 1557438] Tra5 InsE RVT_N RVT-GII GIIM RVT-GII Intron_maturas2 HNHc Neighborhood of RT #6 [1682712, 1690397] STKc_PknB_like TPR_16 TPR_14 WD40 WD40 WD40 KOG0266 RVT-GII GIIM DDE_Tnp_1_4 Neighborhood of RT #7 [2336857, 2342250] PHA02517 RVT_N RVT-GII GIIM HTH_32 DDE_3 Imm1 Neighborhood of RT #8 [2392978, 2398368] GGDEF RVT_N RVT-GII GIIM HTH_MARR Lsr2 Feature: gene Location: 873-2156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876-1422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876-142 2 bp Feature: domain Description: Intron_maturas2 Location: 1524-1755 bp Feature: domain Description: Intron_maturas2 Location: 152 4-1755 bp Feature: gene Location: 2235-3047 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2283-3033 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2 2 83-3033 bp Feature: gene Location: 3449-4813 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3455-4805 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3455-4805 bp Feature: gene Location: 636545-636793 bp Feature: gene Location: 636892-637104 bp Feature: gene Location: 637708-638322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 637726-637933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63772 6-637933 bp Feature: domain Description: GIIM Note: maturase Location: 638014-638242 bp Feature: domain Description: GIIM Note: maturase Location: 638014-6382 42 bp Feature: gene Location: 639672-641003 bp Feature: domain Description: Nterm_IS4 Location: 639720-640014 bp Feature: domain Description: Nterm_IS4 Location: 63972 0-640014 bp Feature: domain Description: DDE_Tnp_1 Location: 640110-640860 bp Feature: domain Description: DDE_Tnp_1 Location: 640110-640860 bp Feature: gene Location: 641639-642034 bp Feature: gene Location: 651458-651922 bp Feature: gene Location: 651919-652539 bp Feature: domain Description: YfmG Location: 652075-652531 bp Feature: domain Description: YfmG Location: 652 075-652 531 bp Feature: gene Location: 652550-653338 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 652769-653291 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 652 769-6532 91 bp Feature: gene Location: 653505-654206 bp Feature: domain Description: NrdG Location: 653529-654189 bp Feature: domain Description: NrdG Location: 65352 9-654189 bp Feature: gene Location: 654203-654586 bp Feature: domain Description: PTPS Location: 654215-654566 bp Feature: domain Description: PTPS Location: 6542 15-654566 bp Feature: gene Location: 1430383-1432677 bp Feature: domain Description: Resolvase Location: 1430395-1430833 bp Feature: domain Description: Resolvase Location: 1430395-1430833 bp Feature: domain Description: Recombinase Location: 1430926-1431277 bp Feature: domain Description: Recombinase Location: 143092 6-14312 77 bp Feature: domain Description: Zn_ribbon_recom Location: 1431325-1431517 bp Feature: domain Description: Zn_ribbon_recom Location: 143132 5-1431517 bp Feature: gene Location: 1432810-1433136 bp Feature: gene Location: 1432528-1434309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1433233-1433551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14332 33-1433551 bp Feature: domain Description: GIIM Note: maturase Location: 1433605-1433839 bp Feature: domain Description: GIIM Note: maturase Location: 1433605-1433839 bp Feature: gene Location: 1434489-1435853 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1434495-1435845 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1434495-1435845 bp Feature: gene Location: 1436472-1436600 bp Feature: gene Location: 1550784-1551554 bp Feature: domain Description: Tra5 Location: 1550847-1551360 bp Feature: domain Description: Tra5 Location: 1550847-1551360 bp Feature: gene Location: 1551803-1552231 bp Feature: domain Description: InsE Location: 1551854-1552127 bp Feature: domain Description: InsE Location: 1551854-1552 12 7 bp Feature: gene Location: 1552764-1554326 bp Feature: domain Description: RVT_N Location: 1552836-1553079 bp Feature: domain Description: RVT_N Location: 1552 836-1553079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1553133-1553796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1553133-1553796 bp Feature: domain Description: GIIM Note: maturase Location: 1553856-1554087 bp Feature: domain Description: GIIM Note: maturase Location: 1553856-1554087 bp Feature: gene Location: 1554890-1556677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1555151-1555946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1555151-1555946 bp Feature: domain Description: Intron_maturas2 Location: 1556048-1556279 bp Feature: domain Description: Intron_maturas2 Location: 1556048-15562 79 bp Feature: domain Description: HNHc Note: nucleases Location: 1556444-1556633 bp Feature: domain Description: HNHc Note: nucleases Location: 1556444-1556633 bp Feature: gene Location: 1556752-1557153 bp Feature: gene Location: 1557199-1557438 bp Feature: gene Location: 1682712-1686173 bp Feature: domain Description: STKc_PknB_like Location: 1682751-1683540 bp Feature: domain Description: STKc_PknB_like Location: 1682 751-1683540 bp Feature: domain Description: TPR_16 Location: 1683624-1683765 bp Feature: domain Description: TPR_16 Location: 168362 4-1683765 bp Feature: domain Description: TPR_14 Location: 1683825-1683939 bp Feature: domain Description: TPR_14 Location: 168382 5-1683939 bp Feature: domain Description: WD40 Location: 1684047-1684707 bp Feature: domain Description: WD40 Location: 1684047-1684707 bp Feature: domain Description: WD40 Location: 1685007-1685289 bp Feature: domain Description: WD40 Location: 1685007-16852 89 bp Feature: domain Description: WD40 Location: 1685352-1685466 bp Feature: domain Description: WD40 Location: 1685352 -1685466 bp Feature: domain Description: KOG0266 Location: 1685637-1685850 bp Feature: domain Description: KOG02 66 Location: 1685637-1685850 bp Feature: gene Location: 1686257-1686694 bp Feature: gene Location: 1686772-1687386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1686790-1686997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1686790-1686997 bp Feature: domain Description: GIIM Note: maturase Location: 1687078-1687306 bp Feature: domain Description: GIIM Note: maturase Location: 1687078-1687306 bp Feature: gene Location: 1688667-1688831 bp Feature: gene Location: 1689033-1690397 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1689039-1690389 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1689039-1690389 bp Feature: gene Location: 2336857-2337615 bp Feature: domain Description: PHA02517 Location: 2336863-2337568 bp Feature: domain Description: PHA02 517 Location: 2 336863-2 337568 bp Feature: gene Location: 2338148-2338609 bp Feature: gene Location: 2338435-2340222 bp Feature: domain Description: RVT_N Location: 2338510-2338747 bp Feature: domain Description: RVT_N Location: 2 338510-2 338747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2338807-2339464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 338807-2 339464 bp Feature: domain Description: GIIM Note: maturase Location: 2339518-2339752 bp Feature: domain Description: GIIM Note: maturase Location: 2 339518-2 339752 bp Feature: gene Location: 2340848-2341810 bp Feature: domain Description: HTH_32 Location: 2341031-2341259 bp Feature: domain Description: HTH_32 Location: 2 341031-2 3412 59 bp Feature: domain Description: DDE_3 Location: 2341391-2341754 bp Feature: domain Description: DDE_3 Location: 2 341391-2 341754 bp Feature: gene Location: 2341990-2342250 bp Feature: domain Description: Imm1 Location: 2342002-2342224 bp Feature: domain Description: Imm1 Location: 2 342 002 -2 342 2 2 4 bp Feature: gene Location: 2392978-2393370 bp Feature: gene Location: 2393533-2394270 bp Feature: domain Description: GGDEF Location: 2393686-2394184 bp Feature: domain Description: GGDEF Location: 2 393686-2 394184 bp Feature: gene Location: 2394926-2396728 bp Feature: domain Description: RVT_N Location: 2395019-2395256 bp Feature: domain Description: RVT_N Location: 2 395019-2 3952 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395316-2395970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 395316-2 395970 bp Feature: domain Description: GIIM Note: maturase Location: 2396021-2396255 bp Feature: domain Description: GIIM Note: maturase Location: 2 39602 1-2 3962 55 bp Feature: gene Location: 2396884-2397840 bp Feature: domain Description: HTH_MARR Location: 2396908-2397121 bp Feature: domain Description: HTH_MARR Location: 2 396908-2 39712 1 bp Feature: gene Location: 2398018-2398368 bp Feature: domain Description: Lsr2 Location: 2398021-2398363 bp Feature: domain Description: Lsr2 Location: 2 39802 1-2 398363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DDE_Tnp_1_4 (pfam13701), GIIM (pfam08388), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), YfmG (COG1262), RVT-CRISPR, NrdG (TIGR02491), PTPS (pfam01242)
Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), Tra5 (COG2801), InsE (COG2963), RVT_N (pfam13655), HNHc (smart00507), STKc_PknB_like (cd14014), TPR_16 (pfam13432), TPR_14 (pfam13428)
WD40 (smart00320), KOG0266 (KOG0266, WD40 repeat-containing protein ), PHA02517 (putative transposase OrfB; Reviewed), HTH_32 (pfam13565), DDE_3 (pfam13358), Imm1 (pfam14430), GGDEF (TIGR00254), HTH_MARR (smart00347), Lsr2 (pfam11774)