myRT

myRT report for GCA_003751905.1_ASM375190v1

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Seq: RJKG01000005.1 (369048 bp)
Overview 1 RT 1: 278916-283444 bp Neighborhood of RT #1 [278916, 283444] HTH_1 PBP2_Pa0477 RVT-Retrons AAA_21 AAA_21 Feature: gene Location: 278916-279896 bp Feature: domain Description: HTH_1 Location: 278985-279162 bp Feature: domain Description: HTH_1 Location: 278985-2791 62 bp Feature: domain Description: PBP2_Pa0477 Location: 279255-279855 bp Feature: domain Description: PBP2_Pa0477 Location: 279255-279855 bp Feature: gene Location: 280009-280377 bp Feature: gene Location: 280539-281612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 280773-281331 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 280773-281 331 bp Feature: gene Location: 281609-282952 bp Feature: domain Description: AAA_21 Location: 281690-281840 bp Feature: domain Description: AAA_21 Location: 281 690-281 840 bp Feature: domain Description: AAA_21 Location: 282182-282353 bp Feature: domain Description: AAA_21 Location: 2821 82-282353 bp Feature: gene Location: 283283-283444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_Pa0477 (cd08468), RVT-Retrons, AAA_21 (pfam13304)

Seq: RJKG01000002.1 (3126398 bp)
Overview 1 RT 1: 122104-126280 bp 2 RT 2: 297610-302128 bp 3 RT 3: 974561-979072 bp 4 RT 4: 1544328-1548056 bp 5 RT 5: 1981799-1986789 bp 6 RT 6: 2081684-2087547 bp 7 RT 7: 2433808-2437948 bp 8 RT 8: 2832434-2838063 bp Neighborhood of RT #1 [122104, 126285] RVT-GII PRK06761 PHA02517 Neighborhood of RT #2 [297610, 302442] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM RAYT Neighborhood of RT #3 [974561, 979101] RVT-GII GIIM prfC Neighborhood of RT #4 [1544328, 1548133] DUF5372 RVT-GII GIIM PHA02517 COG3547 Neighborhood of RT #5 [1981799, 1986827] HTH_17 HTH_17 PinE Zn_ribbon_recom RVT-GII GIIM PHA02517 COG3436 Neighborhood of RT #6 [2081684, 2087547] InsE RVT-GII DUF346 DUF346 DUF346 DUF346 DUF346 DUF346 Peptidase_C25 Peptidase_C25 Neighborhood of RT #7 [2433808, 2438034] DUF5372 RVT-GII GIIM HNHc DEDD_Tnp_IS110 Transposase_20 COG4312 Neighborhood of RT #8 [2832434, 2838938] DDE_5 RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 122104-122295 bp Feature: gene Location: 122759-122992 bp Feature: gene Location: 123016-124536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123487-124180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3487-12 4180 bp Feature: gene Location: 124820-125134 bp Feature: domain Description: PRK06761 Location: 124829-125117 bp Feature: domain Description: PRK06761 Location: 12 482 9-12 5117 bp Feature: gene Location: 125395-126285 bp Feature: domain Description: PHA02517 Location: 125461-126280 bp Feature: domain Description: PHA02 517 Location: 12 5461-12 62 80 bp Feature: gene Location: 297610-297834 bp Feature: gene Location: 298190-299446 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 298229-298694 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2 982 2 9-2 98694 bp Feature: domain Description: Transposase_20 Location: 299021-299273 bp Feature: domain Description: Transposase_2 0 Location: 2 9902 1-2 992 73 bp Feature: gene Location: 299883-301151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300132-300795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300132 -300795 bp Feature: domain Description: GIIM Note: maturase Location: 300864-301080 bp Feature: domain Description: GIIM Note: maturase Location: 300864-301080 bp Feature: gene Location: 301436-301729 bp Feature: gene Location: 301726-302442 bp Feature: domain Description: RAYT Location: 301738-302128 bp Feature: domain Description: RAYT Location: 301738-302 12 8 bp Feature: gene Location: 974561-974788 bp Feature: gene Location: 975038-975250 bp Feature: gene Location: 975266-976633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975593-976214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975593-9762 14 bp Feature: domain Description: GIIM Note: maturase Location: 976268-976475 bp Feature: domain Description: GIIM Note: maturase Location: 9762 68-976475 bp Feature: gene Location: 976546-976794 bp Feature: gene Location: 977500-979101 bp Feature: domain Description: prfC Location: 977512-979072 bp Feature: domain Description: prfC Location: 977512 -979072 bp Feature: gene Location: 1544328-1544660 bp Feature: gene Location: 1544713-1545075 bp Feature: domain Description: DUF5372 Location: 1544806-1545037 bp Feature: domain Description: DUF5372 Location: 1544806-1545037 bp Feature: gene Location: 1545018-1546043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1545033-1545657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1545033-1545657 bp Feature: domain Description: GIIM Note: maturase Location: 1545738-1545969 bp Feature: domain Description: GIIM Note: maturase Location: 1545738-1545969 bp Feature: gene Location: 1546140-1546934 bp Feature: domain Description: PHA02517 Location: 1546206-1546746 bp Feature: domain Description: PHA02 517 Location: 15462 06-1546746 bp Feature: gene Location: 1547018-1548133 bp Feature: domain Description: COG3547 Location: 1547060-1548056 bp Feature: domain Description: COG3547 Location: 1547060-1548056 bp Feature: gene Location: 1981799-1982476 bp Feature: domain Description: HTH_17 Location: 1982138-1982261 bp Feature: domain Description: HTH_17 Location: 1982 138-1982 2 61 bp Feature: domain Description: HTH_17 Location: 1982321-1982435 bp Feature: domain Description: HTH_17 Location: 1982 32 1-1982 435 bp Feature: gene Location: 1982410-1984020 bp Feature: domain Description: PinE Location: 1982461-1983049 bp Feature: domain Description: PinE Location: 1982 461-1983049 bp Feature: domain Description: Zn_ribbon_recom Location: 1983415-1983583 bp Feature: domain Description: Zn_ribbon_recom Location: 1983415-1983583 bp Feature: gene Location: 1984487-1985512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1984499-1984991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1984499-1984991 bp Feature: domain Description: GIIM Note: maturase Location: 1985087-1985264 bp Feature: domain Description: GIIM Note: maturase Location: 1985087-19852 64 bp Feature: gene Location: 1985677-1986072 bp Feature: domain Description: PHA02517 Location: 1985689-1986070 bp Feature: domain Description: PHA02 517 Location: 1985689-1986070 bp Feature: gene Location: 1986111-1986827 bp Feature: domain Description: COG3436 Location: 1986387-1986789 bp Feature: domain Description: COG3436 Location: 1986387-1986789 bp Feature: gene Location: 2081684-2081869 bp Feature: gene Location: 2082328-2082747 bp Feature: domain Description: InsE Location: 2082391-2082559 bp Feature: domain Description: InsE Location: 2 082 391-2 082 559 bp Feature: gene Location: 2082860-2084683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2083598-2084288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 083598-2 0842 88 bp Feature: gene Location: 2084963-2087329 bp Feature: domain Description: DUF346 Location: 2085020-2085125 bp Feature: domain Description: DUF346 Location: 2 08502 0-2 08512 5 bp Feature: domain Description: DUF346 Location: 2085155-2085263 bp Feature: domain Description: DUF346 Location: 2 085155-2 0852 63 bp Feature: domain Description: DUF346 Location: 2085293-2085401 bp Feature: domain Description: DUF346 Location: 2 0852 93-2 085401 bp Feature: domain Description: DUF346 Location: 2085431-2085539 bp Feature: domain Description: DUF346 Location: 2 085431-2 085539 bp Feature: domain Description: DUF346 Location: 2085569-2085677 bp Feature: domain Description: DUF346 Location: 2 085569-2 085677 bp Feature: domain Description: DUF346 Location: 2085707-2085803 bp Feature: domain Description: DUF346 Location: 2 085707-2 085803 bp Feature: domain Description: Peptidase_C25 Location: 2085839-2086778 bp Feature: domain Description: Peptidase_C2 5 Location: 2 085839-2 086778 bp Feature: domain Description: Peptidase_C25 Location: 2087003-2087306 bp Feature: domain Description: Peptidase_C2 5 Location: 2 087003-2 087306 bp Feature: gene Location: 2087386-2087547 bp Feature: gene Location: 2433808-2434140 bp Feature: gene Location: 2434193-2434540 bp Feature: domain Description: DUF5372 Location: 2434271-2434502 bp Feature: domain Description: DUF5372 Location: 2 4342 71-2 434502 bp Feature: gene Location: 2434498-2435841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2434513-2435116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 434513-2 435116 bp Feature: domain Description: GIIM Note: maturase Location: 2435170-2435404 bp Feature: domain Description: GIIM Note: maturase Location: 2 435170-2 435404 bp Feature: domain Description: HNHc Note: nucleases Location: 2435635-2435785 bp Feature: domain Description: HNHc Note: nucleases Location: 2 435635-2 435785 bp Feature: gene Location: 2435936-2437030 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2435942-2436185 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2 435942 -2 436185 bp Feature: domain Description: Transposase_20 Location: 2436566-2436815 bp Feature: domain Description: Transposase_2 0 Location: 2 436566-2 436815 bp Feature: gene Location: 2437240-2438034 bp Feature: domain Description: COG4312 Location: 2437279-2437948 bp Feature: domain Description: COG4312 Location: 2 4372 79-2 437948 bp Feature: gene Location: 2832434-2833834 bp Feature: domain Description: DDE_5 Location: 2832482-2833202 bp Feature: domain Description: DDE_5 Location: 2 832 482 -2 8332 02 bp Feature: gene Location: 2833978-2834217 bp Feature: gene Location: 2834534-2835775 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2834537-2834789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 834537-2 834789 bp Feature: gene Location: 2836204-2837040 bp Feature: gene Location: 2837181-2838938 bp Feature: domain Description: AAA_15 Location: 2837184-2837313 bp Feature: domain Description: AAA_15 Location: 2 837184-2 837313 bp Feature: domain Description: AAA_15 Location: 2837844-2838063 bp Feature: domain Description: AAA_15 Location: 2 837844-2 838063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK06761 (hypothetical protein; Provisional), PHA02517 (putative transposase OrfB; Reviewed), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), GIIM (pfam08388), RAYT (COG1943), prfC (TIGR00503), DUF5372 (pfam17342), COG3547 (Transposase )
HTH_17 (pfam12728), PinE (COG1961), Zn_ribbon_recom (pfam13408), COG3436 (Transposase ), InsE (COG2963), DUF346 (pfam03984), Peptidase_C25 (pfam01364), HNHc (smart00507), COG4312 (Predicted dithiol-disulfide oxidoreductase, DUF899 family ), DDE_5 (pfam13546)
RVT-Retrons, AAA_15 (pfam13175)

Seq: RJKG01000003.1 (2637601 bp)
Overview 1 RT 1: 1101232-1106449 bp 2 RT 2: 1137366-1147648 bp 3 RT 3: 2051453-2056184 bp Neighborhood of RT #1 [1101232, 1106454] KfrA_N RVT_N RVT-GII GIIM HNHc HU YhcG Neighborhood of RT #2 [1137366, 1147656] COG3547 RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 PinE Zn_ribbon_recom Recombinase RVT-GII PHA02517 InsE Neighborhood of RT #3 [2051453, 2056192] QdoI oxa_formateAnti RVT-GII GIIM HTH_1 PBP2_NhaR Feature: gene Location: 1101232-1102287 bp Feature: domain Description: KfrA_N Location: 1101349-1101679 bp Feature: domain Description: KfrA_N Location: 11013 49-1101679 bp Feature: gene Location: 1102624-1102848 bp Feature: gene Location: 1103585-1105288 bp Feature: domain Description: RVT_N Location: 1103639-1103882 bp Feature: domain Description: RVT_N Location: 1103 63 9-1103 882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103927-1104566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103 927-1104566 bp Feature: domain Description: GIIM Note: maturase Location: 1104617-1104851 bp Feature: domain Description: GIIM Note: maturase Location: 1104617-1104851 bp Feature: domain Description: HNHc Note: nucleases Location: 1105079-1105235 bp Feature: domain Description: HNHc Note: nucleases Location: 1105079-110523 5 bp Feature: gene Location: 1105352-1105630 bp Feature: domain Description: HU Location: 1105376-1105616 bp Feature: domain Description: HU Location: 11053 76-1105616 bp Feature: gene Location: 1105627-1106454 bp Feature: domain Description: YhcG Location: 1106077-1106449 bp Feature: domain Description: YhcG Location: 1106077-1106449 bp Feature: gene Location: 1137366-1138481 bp Feature: domain Description: COG3547 Location: 1137408-1138404 bp Feature: domain Description: COG3 547 Location: 113 7408-113 8404 bp Feature: gene Location: 1138598-1138954 bp Feature: gene Location: 1139044-1140069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139056-1139548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 9056-113 9548 bp Feature: domain Description: GIIM Note: maturase Location: 1139644-1139821 bp Feature: domain Description: GIIM Note: maturase Location: 113 9644-113 9821 bp Feature: gene Location: 1140536-1142758 bp Feature: domain Description: PinE Location: 1140587-1141175 bp Feature: domain Description: PinE Location: 1140587-1141175 bp Feature: domain Description: Zn_ribbon_recom Location: 1141541-1141709 bp Feature: domain Description: Zn_ribbon_recom Location: 1141541-1141709 bp Feature: domain Description: HTH_17 Location: 1142420-1142543 bp Feature: domain Description: HTH_17 Location: 1142420-1142543 bp Feature: domain Description: HTH_17 Location: 1142603-1142717 bp Feature: domain Description: HTH_17 Location: 1142603 -1142717 bp Feature: gene Location: 1142833-1142988 bp Feature: gene Location: 1143373-1143705 bp Feature: gene Location: 1143842-1145908 bp Feature: domain Description: PinE Location: 1143884-1144571 bp Feature: domain Description: PinE Location: 1143 884-1144571 bp Feature: domain Description: Zn_ribbon_recom Location: 1144838-1145015 bp Feature: domain Description: Zn_ribbon_recom Location: 114483 8-1145015 bp Feature: domain Description: Recombinase Location: 1145534-1145660 bp Feature: domain Description: Recombinase Location: 114553 4-1145660 bp Feature: gene Location: 1145923-1146234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1146181-1146226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1146181-1146226 bp Feature: gene Location: 1146878-1147336 bp Feature: domain Description: PHA02517 Location: 1146941-1147301 bp Feature: domain Description: PHA02517 Location: 1146941-11473 01 bp Feature: gene Location: 1147336-1147656 bp Feature: domain Description: InsE Location: 1147348-1147648 bp Feature: domain Description: InsE Location: 11473 48-1147648 bp Feature: gene Location: 2051453-2051719 bp Feature: domain Description: QdoI Location: 2051510-2051672 bp Feature: domain Description: QdoI Location: 2051510-2051672 bp Feature: gene Location: 2051804-2053168 bp Feature: domain Description: oxa_formateAnti Location: 2051912-2053124 bp Feature: domain Description: oxa_formateAnti Location: 2051912-2053 124 bp Feature: gene Location: 2053401-2054768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053728-2054349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2053 728-20543 49 bp Feature: domain Description: GIIM Note: maturase Location: 2054403-2054610 bp Feature: domain Description: GIIM Note: maturase Location: 2054403 -2054610 bp Feature: gene Location: 2054784-2054996 bp Feature: gene Location: 2055299-2056192 bp Feature: domain Description: HTH_1 Location: 2055308-2055485 bp Feature: domain Description: HTH_1 Location: 20553 08-2055485 bp Feature: domain Description: PBP2_NhaR Location: 2055575-2056184 bp Feature: domain Description: PBP2_NhaR Location: 2055575-2056184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KfrA_N (pfam11740), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HU (cd13831), YhcG (COG4804), COG3547 (Transposase ), PinE (COG1961), Zn_ribbon_recom (pfam13408)
HTH_17 (pfam12728), Recombinase (pfam07508), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), QdoI (COG1917), oxa_formateAnti (TIGR04259), HTH_1 (pfam00126), PBP2_NhaR (cd08429)

Seq: RJKG01000001.1 (4375473 bp)
Overview 1 RT 1: 152582-157844 bp 2 RT 2: 194093-198309 bp 3 RT 3: 203214-208593 bp 4 RT 4: 722176-725939 bp 5 RT 5: 2209623-2211656 bp 6 RT 6: 2890423-2893060 bp 7 RT 7: 2895297-2900802 bp Neighborhood of RT #1 [152582, 157882] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 DUF5372 Neighborhood of RT #2 [194093, 198309] DDE_3 HTH_23 HTH_33 RVT-GII GIIM RVT-GII GIIM Recombinase Zn_ribbon_recom Neighborhood of RT #3 [203214, 208601] PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII PRK13989 PRK10818 Neighborhood of RT #4 [722176, 725944] rpsI rplM RVT-GII GIIM PRK10738 Neighborhood of RT #5 [2209623, 2211656] RVT-GII RVT-GII GIIM COG1669 Neighborhood of RT #6 [2890423, 2893060] Tra8 RVT-GII Neighborhood of RT #7 [2895297, 2900802] Phage_int_SAM_1 INT_RitA_C_like Recombinase Zn_ribbon_recom RVT-GII GIIM DUF4096 Feature: gene Location: 152582-152722 bp Feature: domain Description: INT_RitB_C_like Location: 152588-152687 bp Feature: domain Description: INT_RitB_C_like Location: 152588-152687 bp Feature: gene Location: 152715-153710 bp Feature: domain Description: Phage_int_SAM_1 Location: 152763-153003 bp Feature: domain Description: Phage_int_SAM_1 Location: 152763-153003 bp Feature: domain Description: INT_RitC_C_like Location: 153096-153630 bp Feature: domain Description: INT_RitC_C_like Location: 153096-153630 bp Feature: gene Location: 153921-154613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153930-154332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153930-154 332 bp Feature: domain Description: GIIM Note: maturase Location: 154401-154539 bp Feature: domain Description: GIIM Note: maturase Location: 154 4 01-154 539 bp Feature: gene Location: 155116-157338 bp Feature: domain Description: PinE Location: 155167-155755 bp Feature: domain Description: PinE Location: 155167-155755 bp Feature: domain Description: Zn_ribbon_recom Location: 156121-156289 bp Feature: domain Description: Zn_ribbon_recom Location: 156121-156289 bp Feature: domain Description: HTH_17 Location: 157000-157123 bp Feature: domain Description: HTH_17 Location: 157000-157123 bp Feature: domain Description: HTH_17 Location: 157183-157297 bp Feature: domain Description: HTH_17 Location: 157183-157297 bp Feature: gene Location: 157355-157882 bp Feature: domain Description: DUF5372 Location: 157613-157844 bp Feature: domain Description: DUF5372 Location: 157613-15784 4 bp Feature: gene Location: 194093-194446 bp Feature: domain Description: DDE_3 Location: 194099-194441 bp Feature: domain Description: DDE_3 Location: 194 099-194 4 4 1 bp Feature: gene Location: 194446-194991 bp Feature: domain Description: HTH_23 Location: 194521-194638 bp Feature: domain Description: HTH_23 Location: 194 521-194 638 bp Feature: domain Description: HTH_33 Location: 194782-194932 bp Feature: domain Description: HTH_33 Location: 194 782-194 932 bp Feature: gene Location: 195183-196352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195546-195933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19554 6-195933 bp Feature: domain Description: GIIM Note: maturase Location: 195984-196188 bp Feature: domain Description: GIIM Note: maturase Location: 195984 -196188 bp Feature: gene Location: 196163-196783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196196-196502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196196-196502 bp Feature: domain Description: GIIM Note: maturase Location: 196571-196769 bp Feature: domain Description: GIIM Note: maturase Location: 196571-196769 bp Feature: gene Location: 196704-197954 bp Feature: domain Description: Recombinase Location: 196785-197148 bp Feature: domain Description: Recombinase Location: 196785-19714 8 bp Feature: domain Description: Zn_ribbon_recom Location: 197187-197376 bp Feature: domain Description: Zn_ribbon_recom Location: 197187-197376 bp Feature: gene Location: 198079-198309 bp Feature: gene Location: 203214-205436 bp Feature: domain Description: PinE Location: 203265-203853 bp Feature: domain Description: PinE Location: 203265-203853 bp Feature: domain Description: Zn_ribbon_recom Location: 204219-204387 bp Feature: domain Description: Zn_ribbon_recom Location: 204 219-204 387 bp Feature: domain Description: HTH_17 Location: 205098-205221 bp Feature: domain Description: HTH_17 Location: 205098-205221 bp Feature: domain Description: HTH_17 Location: 205281-205395 bp Feature: domain Description: HTH_17 Location: 205281-205395 bp Feature: gene Location: 205493-205915 bp Feature: gene Location: 206489-207022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206819-206924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206819-206924 bp Feature: gene Location: 207522-207776 bp Feature: domain Description: PRK13989 Location: 207525-207771 bp Feature: domain Description: PRK13989 Location: 207525-207771 bp Feature: gene Location: 207786-208601 bp Feature: domain Description: PRK10818 Location: 207789-208593 bp Feature: domain Description: PRK10818 Location: 207789-208593 bp Feature: gene Location: 722176-722568 bp Feature: domain Description: rpsI Location: 722188-722566 bp Feature: domain Description: rpsI Location: 722188-722566 bp Feature: gene Location: 722580-723008 bp Feature: domain Description: rplM Location: 722583-723006 bp Feature: domain Description: rplM Location: 722583-723006 bp Feature: gene Location: 723490-724689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723817-724438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723817-724 4 38 bp Feature: domain Description: GIIM Note: maturase Location: 724492-724660 bp Feature: domain Description: GIIM Note: maturase Location: 724 4 92-724 660 bp Feature: gene Location: 724705-724917 bp Feature: gene Location: 725543-725944 bp Feature: domain Description: PRK10738 Location: 725555-725939 bp Feature: domain Description: PRK10738 Location: 725555-725939 bp Feature: gene Location: 2209623-2209898 bp Feature: gene Location: 2210041-2210244 bp Feature: gene Location: 2210338-2210559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2210404-2210551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22104 04 -2210551 bp Feature: gene Location: 2210575-2211096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2210581-2210662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2210581-2210662 bp Feature: domain Description: GIIM Note: maturase Location: 2210731-2210947 bp Feature: domain Description: GIIM Note: maturase Location: 2210731-221094 7 bp Feature: gene Location: 2211154-2211336 bp Feature: domain Description: COG1669 Location: 2211172-2211331 bp Feature: domain Description: COG1669 Location: 2211172-2211331 bp Feature: gene Location: 2211483-2211656 bp Feature: gene Location: 2890423-2890746 bp Feature: domain Description: Tra8 Location: 2890429-2890732 bp Feature: domain Description: Tra8 Location: 28904 29-2890732 bp Feature: gene Location: 2890800-2890952 bp Feature: gene Location: 2891700-2892398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891970-2892384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2891970-2892384 bp Feature: gene Location: 2892463-2892792 bp Feature: gene Location: 2892785-2893060 bp Feature: gene Location: 2895297-2896406 bp Feature: domain Description: Phage_int_SAM_1 Location: 2895564-2895765 bp Feature: domain Description: Phage_int_SAM_1 Location: 2895564 -2895765 bp Feature: domain Description: INT_RitA_C_like Location: 2895861-2896377 bp Feature: domain Description: INT_RitA_C_like Location: 2895861-2896377 bp Feature: gene Location: 2896837-2898219 bp Feature: domain Description: Recombinase Location: 2897062-2897425 bp Feature: domain Description: Recombinase Location: 2897062-28974 25 bp Feature: domain Description: Zn_ribbon_recom Location: 2897464-2897653 bp Feature: domain Description: Zn_ribbon_recom Location: 28974 64 -2897653 bp Feature: gene Location: 2898320-2898844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2898329-2898425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2898329-28984 25 bp Feature: domain Description: GIIM Note: maturase Location: 2898476-2898680 bp Feature: domain Description: GIIM Note: maturase Location: 28984 76-2898680 bp Feature: gene Location: 2899346-2900275 bp Feature: domain Description: DUF4096 Location: 2899364-2899592 bp Feature: domain Description: DUF4 096 Location: 2899364 -2899592 bp Feature: gene Location: 2900527-2900802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, GIIM (pfam08388), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), DUF5372 (pfam17342), DDE_3 (pfam13358)
HTH_23 (pfam13384), HTH_33 (pfam13592), Recombinase (pfam07508), PRK13989 (cell division topological specificity factor MinE; Provisional), PRK10818 (septum site-determining protein MinD), rpsI (PRK00132), rplM (PRK09216), PRK10738 (OsmC family protein), COG1669 (Predicted nucleotidyltransferase ), Tra8 (COG2826)
INT_RitA_C_like (cd01188), DUF4096 (pfam13340)

Seq: RJKG01000004.1 (804151 bp)
Overview 1 RT 1: 118217-123436 bp 2 RT 2: 377462-382194 bp 3 RT 3: 521603-528135 bp 4 RT 4: 668457-671578 bp Neighborhood of RT #1 [118217, 123486] Phage_int_SAM_1 INT_RitC_C_like Recombinase Zn_ribbon_recom RVT-GII GIIM Tnp_DNA_bind Dimer_Tnp_Tn5 Y1_Tnp Neighborhood of RT #2 [377462, 382235] PHA02517 RVT-GII GIIM PinE Zn_ribbon_recom HTH_17 HTH_17 Neighborhood of RT #3 [521603, 528135] RVT-GII GIIM Patatin_and_cPLA2 Neighborhood of RT #4 [668457, 671763] HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 RVT-GII GIIM Resolvase Feature: gene Location: 118217-119209 bp Feature: domain Description: Phage_int_SAM_1 Location: 118256-118496 bp Feature: domain Description: Phage_int_SAM_1 Location: 11825 6-118496 bp Feature: domain Description: INT_RitC_C_like Location: 118589-119132 bp Feature: domain Description: INT_RitC_C_like Location: 1185 89-119132 bp Feature: gene Location: 119252-120631 bp Feature: domain Description: Recombinase Location: 119483-119846 bp Feature: domain Description: Recombinase Location: 119483-119846 bp Feature: domain Description: Zn_ribbon_recom Location: 119891-120095 bp Feature: domain Description: Zn_ribbon_recom Location: 119891-120095 bp Feature: gene Location: 120684-121286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120690-120888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120690-120888 bp Feature: domain Description: GIIM Note: maturase Location: 120966-121194 bp Feature: domain Description: GIIM Note: maturase Location: 120966-121194 bp Feature: gene Location: 121601-122983 bp Feature: domain Description: Tnp_DNA_bind Location: 121628-121796 bp Feature: domain Description: Tnp_DNA_bind Location: 121628-121796 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 122690-122945 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 122690-122945 bp Feature: gene Location: 123043-123486 bp Feature: domain Description: Y1_Tnp Location: 123082-123436 bp Feature: domain Description: Y1_Tnp Location: 123082-123436 bp Feature: gene Location: 377462-377857 bp Feature: gene Location: 377961-378356 bp Feature: domain Description: PHA02517 Location: 377973-378354 bp Feature: domain Description: PHA025 17 Location: 377973-37835 4 bp Feature: gene Location: 378521-379546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378533-379025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3785 33-379025 bp Feature: domain Description: GIIM Note: maturase Location: 379121-379298 bp Feature: domain Description: GIIM Note: maturase Location: 379121-379298 bp Feature: gene Location: 379618-380016 bp Feature: gene Location: 380016-382235 bp Feature: domain Description: PinE Location: 380064-380652 bp Feature: domain Description: PinE Location: 380064-38065 2 bp Feature: domain Description: Zn_ribbon_recom Location: 381018-381186 bp Feature: domain Description: Zn_ribbon_recom Location: 381018-381186 bp Feature: domain Description: HTH_17 Location: 381897-382020 bp Feature: domain Description: HTH_17 Location: 381897-382020 bp Feature: domain Description: HTH_17 Location: 382080-382194 bp Feature: domain Description: HTH_17 Location: 382080-382194 bp Feature: gene Location: 521603-522187 bp Feature: gene Location: 522388-522537 bp Feature: gene Location: 522539-523783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 522743-523397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 22743-5 23397 bp Feature: domain Description: GIIM Note: maturase Location: 523478-523703 bp Feature: domain Description: GIIM Note: maturase Location: 5 23478-5 23703 bp Feature: gene Location: 523865-526954 bp Feature: domain Description: Patatin_and_cPLA2 Location: 524180-524315 bp Feature: domain Description: Patatin_and_cPLA2 Location: 5 24180-5 24315 bp Feature: gene Location: 526957-528135 bp Feature: gene Location: 668457-668954 bp Feature: domain Description: HTH_Tnp_1 Location: 668460-668598 bp Feature: domain Description: HTH_Tnp_1 Location: 668460-6685 98 bp Feature: domain Description: HTH_Tnp_1 Location: 668640-668871 bp Feature: domain Description: HTH_Tnp_1 Location: 668640-668871 bp Feature: gene Location: 668954-670033 bp Feature: domain Description: HTH_23 Location: 669008-669080 bp Feature: domain Description: HTH_23 Location: 669008-669080 bp Feature: domain Description: Tra5 Location: 669191-669845 bp Feature: domain Description: Tra5 Location: 669191-669845 bp Feature: gene Location: 670113-670775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670116-670377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 670116-670377 bp Feature: domain Description: GIIM Note: maturase Location: 670455-670683 bp Feature: domain Description: GIIM Note: maturase Location: 67045 5 -670683 bp Feature: gene Location: 670937-671122 bp Feature: gene Location: 671119-671763 bp Feature: domain Description: Resolvase Location: 671140-671578 bp Feature: domain Description: Resolvase Location: 671140-6715 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), Tnp_DNA_bind (pfam14706), Dimer_Tnp_Tn5 (pfam02281), Y1_Tnp (pfam01797), PHA02517 (putative transposase OrfB; Reviewed)
PinE (COG1961), HTH_17 (pfam12728), Patatin_and_cPLA2 (cl11396), HTH_Tnp_1 (pfam01527), HTH_23 (pfam13384), Tra5 (COG2801), Resolvase (smart00857)