myRT

myRT report for GCA_003788685.1_ASM378868v1

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Seq: NQMK01000001.1 (566356 bp)
Overview 1 RT 1: 553616-561709 bp Neighborhood of RT #1 [553616, 561714] YhcG YhcG_C RMtype1_S_Eco933I-TRD2-CR2_like RMtype1_S_Eco933I-TRD2-CR2_like RVT-UG5 PRK06946 Feature: gene Location: 553616-554656 bp Feature: domain Description: YhcG Location: 553679-554003 bp Feature: domain Description: YhcG Location: 553679-554003 bp Feature: domain Description: YhcG_C Location: 554153-554612 bp Feature: domain Description: YhcG_C Location: 5541 53-55461 2 bp Feature: gene Location: 554649-556991 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 554919-555444 bp Feature: domain Description: RMtype1 _S_Eco933I-TRD2-CR2_like Location: 55491 9-555444 bp Feature: domain Description: RMtype1_S_Eco933I-TRD2-CR2_like Location: 556065-556308 bp Feature: domain Description: RMtype1 _S_Eco933I-TRD2-CR2_like Location: 556065-556308 bp Feature: gene Location: 557077-560115 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 557572-558040 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 557572-558040 bp Feature: gene Location: 560149-560565 bp Feature: gene Location: 560833-561714 bp Feature: domain Description: PRK06946 Location: 560842-561709 bp Feature: domain Description: PRK06946 Location: 560842-561 709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), YhcG_C, RMtype1_S_Eco933I-TRD2-CR2_like (cd17253), RVT-UG5, PRK06946 (lipid A biosynthesis lauroyl acyltransferase; Provisional)

Seq: NQMK01000016.1 (43752 bp)
Overview 1 RT 1: 3394-7285 bp Neighborhood of RT #1 [3394, 7476] SLATT_5 RVT-UG17 MPP_1 Feature: gene Location: 3394-3531 bp Feature: gene Location: 3694-4236 bp Feature: domain Description: SLATT_5 Location: 3700-4210 bp Feature: domain Description: SLATT_5 Location: 3700-42 10 bp Feature: gene Location: 4278-5597 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4461-5064 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4461-5064 bp Feature: gene Location: 5755-5979 bp Feature: gene Location: 5953-7476 bp Feature: domain Description: MPP_1 Location: 6616-7285 bp Feature: domain Description: MPP_1 Location: 6616-72 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, MPP_1 (cd07400)

Seq: NQMK01000010.1 (240040 bp)
Overview 1 RT 1: 146587-151377 bp Neighborhood of RT #1 [146587, 151377] HTH_XRE RVT-Retrons Feature: gene Location: 146587-146769 bp Feature: gene Location: 146811-147101 bp Feature: domain Description: HTH_XRE Location: 146823-146988 bp Feature: domain Description: HTH_XRE Location: 146823 -146988 bp Feature: gene Location: 147129-148142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 147312-147867 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1473 12-147867 bp Feature: gene Location: 148828-149157 bp Feature: gene Location: 149341-151377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: NQMK01000020.1 (3958 bp)
Overview 1 RT 1: 1135-3899 bp Neighborhood of RT #1 [1135, 3919] RVT-GII GIIM PHA02517 Feature: gene Location: 1135-1413 bp Feature: gene Location: 1426-1557 bp Feature: gene Location: 1809-3341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2082-2820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2082-2820 bp Feature: domain Description: GIIM Note: maturase Location: 2928-3093 bp Feature: domain Description: GIIM Note: maturase Location: 2928-3093 bp Feature: gene Location: 3452-3919 bp Feature: domain Description: PHA02517 Location: 3455-3899 bp Feature: domain Description: PHA02517 Location: 34 55-3899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: NQMK01000014.1 (39641 bp)
Overview 1 RT 1: 6251-13977 bp Neighborhood of RT #1 [6251, 13977] HTH_32 rve Mu-transpos_C RVT-UG7 Feature: gene Location: 6251-8269 bp Feature: domain Description: HTH_32 Location: 6659-6827 bp Feature: domain Description: HTH_32 Location: 665 9-6827 bp Feature: domain Description: rve Location: 7019-7421 bp Feature: domain Description: rve Location: 7019-7421 bp Feature: domain Description: Mu-transpos_C Location: 7700-7889 bp Feature: domain Description: Mu-transpos_C Location: 7700-7889 bp Feature: gene Location: 8257-9102 bp Feature: gene Location: 9843-11537 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 10266-10686 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 10266-10686 bp Feature: gene Location: 11695-12252 bp Feature: gene Location: 12292-13977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), RVT-UG7