myRT

myRT report for GCA_003797885.1_ASM379788v1

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Seq: RKKD01000003.1 (402292 bp)
Overview 1 RT 1: 327114-330733 bp Neighborhood of RT #1 [327114, 330843] RVT_N RVT-GII GIIM Mrr_cat Feature: gene Location: 327114-327308 bp Feature: gene Location: 327537-327773 bp Feature: gene Location: 327844-329475 bp Feature: domain Description: RVT_N Location: 328051-328294 bp Feature: domain Description: RVT_N Location: 328051 -328294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328339-328966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328339-328966 bp Feature: domain Description: GIIM Note: maturase Location: 329026-329251 bp Feature: domain Description: GIIM Note: maturase Location: 329026-329251 bp Feature: gene Location: 329768-329905 bp Feature: gene Location: 330112-330843 bp Feature: domain Description: Mrr_cat Location: 330460-330733 bp Feature: domain Description: Mrr_cat Location: 330460-330733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Mrr_cat (pfam04471)

Seq: RKKD01000001.1 (434875 bp)
Overview 1 RT 1: 241729-247377 bp Neighborhood of RT #1 [241729, 247377] RVT-UG1 HsdR Feature: gene Location: 241729-242586 bp Feature: gene Location: 242610-243050 bp Feature: gene Location: 243047-246724 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 243677-244166 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2 43677-2 44166 bp Feature: gene Location: 246733-247083 bp Feature: domain Description: HsdR Location: 246748-247042 bp Feature: domain Description: HsdR Location: 2 46748-2 47042 bp Feature: gene Location: 247228-247377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, HsdR (COG4096)

Seq: RKKD01000005.1 (343804 bp)
Overview 1 RT 1: 338227-343334 bp Neighborhood of RT #1 [338227, 343345] RimI DUF3335 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 338227-339345 bp Feature: domain Description: RimI Location: 338242-338689 bp Feature: domain Description: RimI Location: 3 3 8242-3 3 8689 bp Feature: domain Description: DUF3335 Location: 338722-339331 bp Feature: domain Description: DUF3 3 3 5 Location: 3 3 8722-3 3 93 3 1 bp Feature: gene Location: 339873-340232 bp Feature: domain Description: PHA02517 Location: 339876-340212 bp Feature: domain Description: PHA02517 Location: 3 3 9876-3 40212 bp Feature: gene Location: 340442-341965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340715-341447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 40715-3 41447 bp Feature: domain Description: GIIM Note: maturase Location: 341519-341720 bp Feature: domain Description: GIIM Note: maturase Location: 3 41519-3 41720 bp Feature: gene Location: 342606-342962 bp Feature: domain Description: PHA02517 Location: 342612-342939 bp Feature: domain Description: PHA02517 Location: 3 42612-3 4293 9 bp Feature: gene Location: 343016-343345 bp Feature: domain Description: InsE Location: 343043-343334 bp Feature: domain Description: InsE Location: 3 43 043 -3 43 3 3 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimI (COG0456), DUF3335 (pfam11814), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: RKKD01000025.1 (16931 bp)
Overview 1 RT 1: 10980-13200 bp Neighborhood of RT #1 [10980, 13367] HTH_XRE RVT-GII GIIM RVT-GII Phage_int_SAM_4 SSL2 Feature: gene Location: 10980-11186 bp Feature: domain Description: HTH_XRE Location: 11007-11178 bp Feature: domain Description: HTH_XRE Location: 11007-11178 bp Feature: gene Location: 11351-11524 bp Feature: gene Location: 11557-12099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11593-11797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11593-11797 bp Feature: domain Description: GIIM Note: maturase Location: 11854-12082 bp Feature: domain Description: GIIM Note: maturase Location: 11854 -12082 bp Feature: gene Location: 12188-12445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12191-12440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12191-124 4 0 bp Feature: gene Location: 12619-12870 bp Feature: domain Description: Phage_int_SAM_4 Location: 12655-12868 bp Feature: domain Description: Phage_int_SAM_4 Location: 12655-12868 bp Feature: gene Location: 12885-13367 bp Feature: domain Description: SSL2 Location: 12888-13200 bp Feature: domain Description: SSL2 Location: 12888-13200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), SSL2 (COG1061)

Seq: RKKD01000006.1 (325988 bp)
Overview 1 RT 1: 115128-120519 bp Neighborhood of RT #1 [115128, 120563] RVT_N RVT-GII GIIM NOD_PanD_pyr Feature: gene Location: 115128-115364 bp Feature: gene Location: 115778-116089 bp Feature: gene Location: 116787-118301 bp Feature: domain Description: RVT_N Location: 116877-117120 bp Feature: domain Description: RVT_N Location: 116877-117120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117165-117792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117165 -117792 bp Feature: domain Description: GIIM Note: maturase Location: 117849-118077 bp Feature: domain Description: GIIM Note: maturase Location: 117849-118077 bp Feature: gene Location: 118372-118650 bp Feature: gene Location: 118923-120563 bp Feature: domain Description: NOD_PanD_pyr Location: 118944-120519 bp Feature: domain Description: NOD_PanD_pyr Location: 118944-1205 19 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NOD_PanD_pyr (TIGR03799)

Seq: RKKD01000014.1 (149524 bp)
Overview 1 RT 1: 93033-98019 bp 2 RT 2: 143321-149521 bp Neighborhood of RT #1 [93033, 98019] PRK10590 RVT-Retrons Trypsin_2 Neighborhood of RT #2 [143321, 149521] DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM Feature: gene Location: 93033-93236 bp Feature: gene Location: 93382-94683 bp Feature: domain Description: PRK10590 Location: 93385-94621 bp Feature: domain Description: PRK10590 Location: 93385-946 21 bp Feature: gene Location: 95339-97165 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95609-96209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 956 09-96 209 bp Feature: domain Description: Trypsin_2 Location: 96602-97028 bp Feature: domain Description: Trypsin_2 Location: 96 6 02-97028 bp Feature: gene Location: 97406-97564 bp Feature: gene Location: 97888-98019 bp Feature: gene Location: 143321-143752 bp Feature: gene Location: 143906-146884 bp Feature: domain Description: DUF4158 Location: 143933-144422 bp Feature: domain Description: DUF4158 Location: 143933-144422 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 145649-146819 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1456 49-146 819 bp Feature: gene Location: 147288-148802 bp Feature: domain Description: RVT_N Location: 147378-147621 bp Feature: domain Description: RVT_N Location: 147378-1476 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147666-148293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1476 6 6 -148293 bp Feature: domain Description: GIIM Note: maturase Location: 148350-148578 bp Feature: domain Description: GIIM Note: maturase Location: 148350-148578 bp Feature: gene Location: 148868-149146 bp Feature: gene Location: 149369-149521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10590 (ATP-dependent RNA helicase RhlE; Provisional), RVT-Retrons, Trypsin_2 (pfam13365), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: RKKD01000022.1 (31278 bp)
Overview 1 RT 1: 26197-29740 bp Neighborhood of RT #1 [26197, 29740] RVT-GII GIIM Feature: gene Location: 26197-26637 bp Feature: gene Location: 26911-27156 bp Feature: gene Location: 27278-28627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27560-28178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 560-2817 8 bp Feature: domain Description: GIIM Note: maturase Location: 28226-28430 bp Feature: domain Description: GIIM Note: maturase Location: 28226-28430 bp Feature: gene Location: 28728-29168 bp Feature: gene Location: 29318-29740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)