myRT

myRT report for GCA_003834005.1_ASM383400v1

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Seq: NSNB01000025.1 (69771 bp)
Overview 1 RT 1: 27322-29474 bp Neighborhood of RT #1 [27322, 30007] HipB RVT-UG17 Feature: gene Location: 27322-27603 bp Feature: domain Description: HipB Location: 27343-27577 bp Feature: domain Description: HipB Location: 27343-27577 bp Feature: gene Location: 27689-28114 bp Feature: gene Location: 28643-30007 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28871-29474 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 28871 -29474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: NSNB01000001.1 (649936 bp)
Overview 1 RT 1: 644108-649637 bp Neighborhood of RT #1 [644108, 649933] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 644108-645652 bp Feature: domain Description: CHD Location: 644324-644738 bp Feature: domain Description: CHD Location: 64432 4-644738 bp Feature: domain Description: CHD Location: 644966-645455 bp Feature: domain Description: CHD Location: 644966-645455 bp Feature: gene Location: 646736-646915 bp Feature: gene Location: 647647-648915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647860-648517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647860-648517 bp Feature: domain Description: GIIM Note: maturase Location: 648595-648817 bp Feature: domain Description: GIIM Note: maturase Location: 648595-648817 bp Feature: gene Location: 649304-649933 bp Feature: domain Description: DUF772 Location: 649442-649637 bp Feature: domain Description: DUF772 Location: 649442 -649637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NSNB01000007.1 (414486 bp)
Overview 1 RT 1: 50195-59053 bp 2 RT 2: 75322-85619 bp Neighborhood of RT #1 [50195, 59061] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [75322, 85630] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50195-50869 bp Feature: domain Description: NTP_transferase_like_1 Location: 50201-50840 bp Feature: domain Description: NTP_transferase_like_1 Location: 50201-50840 bp Feature: gene Location: 50866-51882 bp Feature: domain Description: COG3178 Location: 50869-51868 bp Feature: domain Description: COG3 178 Location: 50869-51868 bp Feature: gene Location: 53154-54866 bp Feature: domain Description: RVT_N Location: 53211-53454 bp Feature: domain Description: RVT_N Location: 53 211-53 454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53499-54135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 499-5413 5 bp Feature: domain Description: YkfC Location: 54345-54495 bp Feature: domain Description: YkfC Location: 543 45-54495 bp Feature: domain Description: HNH Note: nucleases Location: 54672-54810 bp Feature: domain Description: HNH Note: nucleases Location: 54672-54810 bp Feature: gene Location: 54999-57788 bp Feature: domain Description: LptD Location: 55194-57774 bp Feature: domain Description: LptD Location: 55194-57774 bp Feature: gene Location: 57847-59061 bp Feature: domain Description: PRK10770 Location: 57859-59053 bp Feature: domain Description: PRK10770 Location: 57859-59053 bp Feature: gene Location: 75322-77175 bp Feature: domain Description: PRK05658 Location: 75334-77173 bp Feature: domain Description: PRK05658 Location: 753 3 4-77173 bp Feature: gene Location: 77282-81019 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 77390-78047 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 773 90-78047 bp Feature: domain Description: PRK09776 Location: 78260-78731 bp Feature: domain Description: PRK09776 Location: 78260-7873 1 bp Feature: domain Description: PAS Location: 78821-79313 bp Feature: domain Description: PAS Location: 78821-793 13 bp Feature: domain Description: PRK10060 Location: 79322-80969 bp Feature: domain Description: PRK10060 Location: 793 22-80969 bp Feature: gene Location: 82100-83785 bp Feature: domain Description: RVT_N Location: 82157-82397 bp Feature: domain Description: RVT_N Location: 82157-823 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82445-83081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82445-83 081 bp Feature: domain Description: GIIM Note: maturase Location: 83135-83366 bp Feature: domain Description: GIIM Note: maturase Location: 83 13 5-83 3 66 bp Feature: domain Description: HNH Note: nucleases Location: 83618-83756 bp Feature: domain Description: HNH Note: nucleases Location: 83 618-83 756 bp Feature: gene Location: 84113-84250 bp Feature: gene Location: 84509-85630 bp Feature: domain Description: COG3177 Location: 84527-85619 bp Feature: domain Description: COG3 177 Location: 84527-85619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )