myRT

myRT report for GCA_003834015.1_ASM383401v1

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Seq: NSNH01000008.1 (285870 bp)
Overview 1 RT 1: 280042-285571 bp Neighborhood of RT #1 [280042, 285867] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 280042-281586 bp Feature: domain Description: CHD Location: 280258-280672 bp Feature: domain Description: CHD Location: 280258-280672 bp Feature: domain Description: CHD Location: 280900-281389 bp Feature: domain Description: CHD Location: 280900-281 389 bp Feature: gene Location: 282670-282849 bp Feature: gene Location: 283581-284849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283794-284451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283794-284451 bp Feature: domain Description: GIIM Note: maturase Location: 284529-284751 bp Feature: domain Description: GIIM Note: maturase Location: 284529-284751 bp Feature: gene Location: 285238-285867 bp Feature: domain Description: DUF772 Location: 285376-285571 bp Feature: domain Description: DUF772 Location: 285376-285571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NSNH01000023.1 (65180 bp)
Overview 1 RT 1: 27653-29805 bp Neighborhood of RT #1 [27653, 30338] HipB RVT-UG17 Feature: gene Location: 27653-27934 bp Feature: domain Description: HipB Location: 27674-27908 bp Feature: domain Description: HipB Location: 2 7674-2 7908 bp Feature: gene Location: 28020-28445 bp Feature: gene Location: 28974-30338 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 29202-29805 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 92 02 -2 9805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: NSNH01000007.1 (414185 bp)
Overview 1 RT 1: 49938-58796 bp 2 RT 2: 75065-85362 bp Neighborhood of RT #1 [49938, 58804] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [75065, 85373] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49938-50612 bp Feature: domain Description: NTP_transferase_like_1 Location: 49944-50583 bp Feature: domain Description: NTP_transferase_like_1 Location: 49944-50583 bp Feature: gene Location: 50609-51625 bp Feature: domain Description: COG3178 Location: 50612-51611 bp Feature: domain Description: COG3 178 Location: 50612-51611 bp Feature: gene Location: 52897-54609 bp Feature: domain Description: RVT_N Location: 52954-53197 bp Feature: domain Description: RVT_N Location: 52954-53 197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53242-53878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 242-53 878 bp Feature: domain Description: YkfC Location: 54088-54238 bp Feature: domain Description: YkfC Location: 54088-5423 8 bp Feature: domain Description: HNH Note: nucleases Location: 54415-54553 bp Feature: domain Description: HNH Note: nucleases Location: 54415-54553 bp Feature: gene Location: 54742-57531 bp Feature: domain Description: LptD Location: 54937-57517 bp Feature: domain Description: LptD Location: 5493 7-57517 bp Feature: gene Location: 57590-58804 bp Feature: domain Description: PRK10770 Location: 57602-58796 bp Feature: domain Description: PRK10770 Location: 57602-58796 bp Feature: gene Location: 75065-76918 bp Feature: domain Description: PRK05658 Location: 75077-76916 bp Feature: domain Description: PRK05658 Location: 75077-76916 bp Feature: gene Location: 77025-80762 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 77133-77790 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7713 3 -77790 bp Feature: domain Description: PRK09776 Location: 78003-78474 bp Feature: domain Description: PRK09776 Location: 78003 -78474 bp Feature: domain Description: PAS Location: 78564-79056 bp Feature: domain Description: PAS Location: 78564-79056 bp Feature: domain Description: PRK10060 Location: 79065-80712 bp Feature: domain Description: PRK10060 Location: 79065-80712 bp Feature: gene Location: 81843-83528 bp Feature: domain Description: RVT_N Location: 81900-82140 bp Feature: domain Description: RVT_N Location: 81900-82140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82188-82824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82188-82824 bp Feature: domain Description: GIIM Note: maturase Location: 82878-83109 bp Feature: domain Description: GIIM Note: maturase Location: 82878-83 109 bp Feature: domain Description: HNH Note: nucleases Location: 83361-83499 bp Feature: domain Description: HNH Note: nucleases Location: 83 3 61-83 499 bp Feature: gene Location: 83856-83993 bp Feature: gene Location: 84252-85373 bp Feature: domain Description: COG3177 Location: 84270-85362 bp Feature: domain Description: COG3 177 Location: 84270-853 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )