myRT

myRT report for GCA_003834185.1_ASM383418v1

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Seq: NSNS01000003.1 (413998 bp)
Overview 1 RT 1: 49688-58546 bp 2 RT 2: 74810-85107 bp Neighborhood of RT #1 [49688, 58554] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74810, 85118] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49688-50362 bp Feature: domain Description: NTP_transferase_like_1 Location: 49694-50333 bp Feature: domain Description: NTP_transferase_like_1 Location: 49694-50333 bp Feature: gene Location: 50359-51375 bp Feature: domain Description: COG3178 Location: 50362-51361 bp Feature: domain Description: COG31 78 Location: 50362-51 361 bp Feature: gene Location: 52647-54359 bp Feature: domain Description: RVT_N Location: 52704-52947 bp Feature: domain Description: RVT_N Location: 52704-52947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52992-53628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52992-53628 bp Feature: domain Description: YkfC Location: 53838-53988 bp Feature: domain Description: YkfC Location: 53838-53988 bp Feature: domain Description: HNH Note: nucleases Location: 54165-54303 bp Feature: domain Description: HNH Note: nucleases Location: 541 65-54303 bp Feature: gene Location: 54492-57281 bp Feature: domain Description: LptD Location: 54687-57267 bp Feature: domain Description: LptD Location: 54687-57267 bp Feature: gene Location: 57340-58554 bp Feature: domain Description: PRK10770 Location: 57352-58546 bp Feature: domain Description: PRK1 0770 Location: 57352-58546 bp Feature: gene Location: 74810-76663 bp Feature: domain Description: PRK05658 Location: 74822-76661 bp Feature: domain Description: PRK05658 Location: 74822-76661 bp Feature: gene Location: 76770-80507 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76878-77535 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76878-77535 bp Feature: domain Description: PRK09776 Location: 77748-78219 bp Feature: domain Description: PRK09776 Location: 77748-7821 9 bp Feature: domain Description: PAS Location: 78309-78801 bp Feature: domain Description: PAS Location: 78309-78801 bp Feature: domain Description: PRK10060 Location: 78810-80457 bp Feature: domain Description: PRK1 0060 Location: 7881 0-80457 bp Feature: gene Location: 81588-83273 bp Feature: domain Description: RVT_N Location: 81645-81885 bp Feature: domain Description: RVT_N Location: 81 645-81 885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81933-82569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 933-82569 bp Feature: domain Description: GIIM Note: maturase Location: 82623-82854 bp Feature: domain Description: GIIM Note: maturase Location: 82623-82854 bp Feature: domain Description: HNH Note: nucleases Location: 83106-83244 bp Feature: domain Description: HNH Note: nucleases Location: 831 06-83244 bp Feature: gene Location: 83601-83738 bp Feature: gene Location: 83997-85118 bp Feature: domain Description: COG3177 Location: 84015-85107 bp Feature: domain Description: COG31 77 Location: 8401 5-851 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: NSNS01000018.1 (155130 bp)
Overview 1 RT 1: 149302-154831 bp Neighborhood of RT #1 [149302, 155127] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 149302-150846 bp Feature: domain Description: CHD Location: 149518-149932 bp Feature: domain Description: CHD Location: 149518-149932 bp Feature: domain Description: CHD Location: 150160-150649 bp Feature: domain Description: CHD Location: 150160-150649 bp Feature: gene Location: 151930-152109 bp Feature: gene Location: 152841-154109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153054-153711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153054-153711 bp Feature: domain Description: GIIM Note: maturase Location: 153789-154011 bp Feature: domain Description: GIIM Note: maturase Location: 153789-154011 bp Feature: gene Location: 154498-155127 bp Feature: domain Description: DUF772 Location: 154636-154831 bp Feature: domain Description: DUF772 Location: 154636-154831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NSNS01000030.1 (69184 bp)
Overview 1 RT 1: 26735-28887 bp Neighborhood of RT #1 [26735, 29420] HipB RVT-UG17 Feature: gene Location: 26735-27016 bp Feature: domain Description: HipB Location: 26756-26990 bp Feature: domain Description: HipB Location: 26756-26990 bp Feature: gene Location: 27102-27527 bp Feature: gene Location: 28056-29420 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28284-28887 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 28284-28887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17