myRT

myRT report for GCA_003836405.1_ASM383640v1

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Seq: NSTG01000005.1 (485339 bp)
Overview 1 RT 1: 479511-485040 bp Neighborhood of RT #1 [479511, 485336] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 479511-481055 bp Feature: domain Description: CHD Location: 479727-480141 bp Feature: domain Description: CHD Location: 479727-4801 41 bp Feature: domain Description: CHD Location: 480369-480858 bp Feature: domain Description: CHD Location: 480369-480858 bp Feature: gene Location: 482139-482318 bp Feature: gene Location: 483050-484318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483263-483920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 483263-483920 bp Feature: domain Description: GIIM Note: maturase Location: 483998-484220 bp Feature: domain Description: GIIM Note: maturase Location: 483998-484220 bp Feature: gene Location: 484707-485336 bp Feature: domain Description: DUF772 Location: 484845-485040 bp Feature: domain Description: DUF772 Location: 484845-485040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NSTG01000017.1 (86407 bp)
Overview 1 RT 1: 43958-46110 bp Neighborhood of RT #1 [43958, 46643] HipB RVT-UG17 Feature: gene Location: 43958-44239 bp Feature: domain Description: HipB Location: 43979-44213 bp Feature: domain Description: HipB Location: 43979-442 13 bp Feature: gene Location: 44325-44750 bp Feature: gene Location: 45279-46643 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 45507-46110 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 45507-46110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG17

Seq: NSTG01000006.1 (414202 bp)
Overview 1 RT 1: 49742-58600 bp 2 RT 2: 74869-85166 bp Neighborhood of RT #1 [49742, 58608] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74869, 85177] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49742-50416 bp Feature: domain Description: NTP_transferase_like_1 Location: 49748-50387 bp Feature: domain Description: NTP_transferase_like_1 Location: 49748-503 87 bp Feature: gene Location: 50413-51429 bp Feature: domain Description: COG3178 Location: 50416-51415 bp Feature: domain Description: COG3 178 Location: 50416-51415 bp Feature: gene Location: 52701-54413 bp Feature: domain Description: RVT_N Location: 52758-53001 bp Feature: domain Description: RVT_N Location: 52758-53 001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53046-53682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 046-53 682 bp Feature: domain Description: YkfC Location: 53892-54042 bp Feature: domain Description: YkfC Location: 53 892-54042 bp Feature: domain Description: HNH Note: nucleases Location: 54219-54357 bp Feature: domain Description: HNH Note: nucleases Location: 54219-543 57 bp Feature: gene Location: 54546-57335 bp Feature: domain Description: LptD Location: 54741-57321 bp Feature: domain Description: LptD Location: 54741-573 21 bp Feature: gene Location: 57394-58608 bp Feature: domain Description: PRK10770 Location: 57406-58600 bp Feature: domain Description: PRK10770 Location: 57406-58600 bp Feature: gene Location: 74869-76722 bp Feature: domain Description: PRK05658 Location: 74881-76720 bp Feature: domain Description: PRK05658 Location: 74881-76720 bp Feature: gene Location: 76829-80566 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76937-77594 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7693 7-77594 bp Feature: domain Description: PRK09776 Location: 77807-78278 bp Feature: domain Description: PRK09776 Location: 77807-78278 bp Feature: domain Description: PAS Location: 78368-78860 bp Feature: domain Description: PAS Location: 783 68-78860 bp Feature: domain Description: PRK10060 Location: 78869-80516 bp Feature: domain Description: PRK10060 Location: 78869-80516 bp Feature: gene Location: 81647-83332 bp Feature: domain Description: RVT_N Location: 81704-81944 bp Feature: domain Description: RVT_N Location: 81704-81944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81992-82628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81992-82628 bp Feature: domain Description: GIIM Note: maturase Location: 82682-82913 bp Feature: domain Description: GIIM Note: maturase Location: 82682-82913 bp Feature: domain Description: HNH Note: nucleases Location: 83165-83303 bp Feature: domain Description: HNH Note: nucleases Location: 83 165-83 3 03 bp Feature: gene Location: 83660-83797 bp Feature: gene Location: 84056-85177 bp Feature: domain Description: COG3177 Location: 84074-85166 bp Feature: domain Description: COG3 177 Location: 84074-85166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )