myRT

myRT report for GCA_003836775.1_ASM383677v1

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Seq: NSUH01000044.1 (36464 bp)
Overview 1 RT 1: 2046-9357 bp Neighborhood of RT #1 [2046, 10412] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 2046-3185 bp Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_21 Location: 21 1 8-21 87 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: domain Description: AAA_21 Location: 2661 -2991 bp Feature: gene Location: 3185-3742 bp Feature: gene Location: 3739-6759 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: gene Location: 6756-8537 bp Feature: domain Description: YeeA Location: 7623-8403 bp Feature: domain Description: YeeA Location: 7623-8403 bp Feature: gene Location: 8541-10412 bp Feature: domain Description: DUF262 Location: 8589-9357 bp Feature: domain Description: DUF262 Location: 8589-9357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NSUH01000006.1 (301190 bp)
Overview 1 RT 1: 295362-300891 bp Neighborhood of RT #1 [295362, 301187] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 295362-296906 bp Feature: domain Description: CHD Location: 295578-295992 bp Feature: domain Description: CHD Location: 2 95578-2 95992 bp Feature: domain Description: CHD Location: 296220-296709 bp Feature: domain Description: CHD Location: 2 962 2 0-2 96709 bp Feature: gene Location: 297990-298169 bp Feature: gene Location: 298901-300169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299114-299771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 99114-2 99771 bp Feature: domain Description: GIIM Note: maturase Location: 299849-300071 bp Feature: domain Description: GIIM Note: maturase Location: 2 99849-300071 bp Feature: gene Location: 300558-301187 bp Feature: domain Description: DUF772 Location: 300696-300891 bp Feature: domain Description: DUF772 Location: 300696-300891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NSUH01000012.1 (373525 bp)
Overview 1 RT 1: 120334-131067 bp 2 RT 2: 147325-156145 bp 3 RT 3: 297053-302639 bp Neighborhood of RT #1 [120334, 131069] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [147325, 156174] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [297053, 302639] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 120334-120549 bp Feature: domain Description: NERD Location: 120361-120484 bp Feature: domain Description: NERD Location: 1203 61-120484 bp Feature: gene Location: 120762-121883 bp Feature: domain Description: COG3177 Location: 120780-121872 bp Feature: domain Description: COG3 177 Location: 120780-121872 bp Feature: gene Location: 122606-124291 bp Feature: domain Description: RVT_N Location: 122663-122903 bp Feature: domain Description: RVT_N Location: 122663 -122903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122951-123587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122951-123 587 bp Feature: domain Description: GIIM Note: maturase Location: 123641-123872 bp Feature: domain Description: GIIM Note: maturase Location: 123 641-123 872 bp Feature: domain Description: HNH Note: nucleases Location: 124124-124262 bp Feature: domain Description: HNH Note: nucleases Location: 124124-124262 bp Feature: gene Location: 125372-129109 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 125480-126137 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 125480-12613 7 bp Feature: domain Description: PRK09776 Location: 126350-126821 bp Feature: domain Description: PRK09776 Location: 1263 50-126821 bp Feature: domain Description: PAS Location: 126878-127403 bp Feature: domain Description: PAS Location: 126878-127403 bp Feature: domain Description: PRK10060 Location: 127415-129059 bp Feature: domain Description: PRK10060 Location: 127415-129059 bp Feature: gene Location: 129216-131069 bp Feature: domain Description: PRK05658 Location: 129228-131067 bp Feature: domain Description: PRK05658 Location: 129228-13 1067 bp Feature: gene Location: 147325-148539 bp Feature: domain Description: PRK10770 Location: 147337-148531 bp Feature: domain Description: PRK10770 Location: 1473 3 7-14853 1 bp Feature: gene Location: 148598-151369 bp Feature: domain Description: LptD Location: 148793-151355 bp Feature: domain Description: LptD Location: 148793 -1513 55 bp Feature: gene Location: 151502-153214 bp Feature: domain Description: RVT_N Location: 151559-151802 bp Feature: domain Description: RVT_N Location: 151559-151802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151847-152483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151847-152483 bp Feature: domain Description: YkfC Location: 152693-152843 bp Feature: domain Description: YkfC Location: 152693 -152843 bp Feature: domain Description: HNH Note: nucleases Location: 153020-153158 bp Feature: domain Description: HNH Note: nucleases Location: 153 020-153 158 bp Feature: gene Location: 154487-155503 bp Feature: domain Description: COG3178 Location: 154490-155489 bp Feature: domain Description: COG3 178 Location: 154490-155489 bp Feature: gene Location: 155500-156174 bp Feature: domain Description: NTP_transferase_like_1 Location: 155506-156145 bp Feature: domain Description: NTP_transferase_like_1 Location: 155506-156145 bp Feature: gene Location: 297053-297889 bp Feature: domain Description: HDOD Location: 297056-297884 bp Feature: domain Description: HDOD Location: 297056-297884 bp Feature: gene Location: 297990-298934 bp Feature: domain Description: YgfZ Location: 297999-298899 bp Feature: domain Description: YgfZ Location: 297999-298899 bp Feature: gene Location: 300657-301976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300660-301236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 00660-3 0123 6 bp Feature: domain Description: YkfC Location: 301434-301590 bp Feature: domain Description: YkfC Location: 3 0143 4-3 01590 bp Feature: domain Description: HNH Note: nucleases Location: 301773-301911 bp Feature: domain Description: HNH Note: nucleases Location: 3 01773 -3 01911 bp Feature: gene Location: 302052-302306 bp Feature: domain Description: SdhE Location: 302058-302298 bp Feature: domain Description: SdhE Location: 3 02058-3 02298 bp Feature: gene Location: 302445-302639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), HDOD (pfam08668), YgfZ (COG0354), SdhE (COG2938)