myRT

myRT report for GCA_003837665.1_ASM383766v1

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Seq: NSVB01000019.1 (185511 bp)
Overview 1 RT 1: 88311-93892 bp Neighborhood of RT #1 [88311, 93897] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 88311-88505 bp Feature: gene Location: 88644-88898 bp Feature: domain Description: SdhE Location: 88650-88890 bp Feature: domain Description: SdhE Location: 88650-88890 bp Feature: gene Location: 88974-90293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88977-89553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88977-89553 bp Feature: domain Description: YkfC Location: 89751-89907 bp Feature: domain Description: YkfC Location: 89751 -89907 bp Feature: domain Description: HNH Note: nucleases Location: 90090-90228 bp Feature: domain Description: HNH Note: nucleases Location: 90090-90228 bp Feature: gene Location: 92016-92960 bp Feature: domain Description: YgfZ Location: 92025-92925 bp Feature: domain Description: YgfZ Location: 92025-92925 bp Feature: gene Location: 93061-93897 bp Feature: domain Description: HDOD Location: 93064-93892 bp Feature: domain Description: HDOD Location: 93064-93892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: NSVB01000018.1 (192953 bp)
Overview 1 RT 1: 107551-118284 bp 2 RT 2: 134542-143362 bp Neighborhood of RT #1 [107551, 118286] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [134542, 143391] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 107551-107766 bp Feature: domain Description: NERD Location: 107578-107701 bp Feature: domain Description: NERD Location: 107578-107701 bp Feature: gene Location: 107979-109100 bp Feature: domain Description: COG3177 Location: 107997-109089 bp Feature: domain Description: COG3177 Location: 107997-109089 bp Feature: gene Location: 109823-111508 bp Feature: domain Description: RVT_N Location: 109880-110120 bp Feature: domain Description: RVT_N Location: 109880-11012 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110168-110804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110168-110804 bp Feature: domain Description: GIIM Note: maturase Location: 110858-111089 bp Feature: domain Description: GIIM Note: maturase Location: 110858-111089 bp Feature: domain Description: HNH Note: nucleases Location: 111341-111479 bp Feature: domain Description: HNH Note: nucleases Location: 111341-111479 bp Feature: gene Location: 112589-116326 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 112697-113354 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 112 697-113354 bp Feature: domain Description: PRK09776 Location: 113567-114038 bp Feature: domain Description: PRK09776 Location: 113567-114038 bp Feature: domain Description: PAS Location: 114095-114620 bp Feature: domain Description: PAS Location: 114095-11462 0 bp Feature: domain Description: PRK10060 Location: 114632-116276 bp Feature: domain Description: PRK10060 Location: 114632 -1162 76 bp Feature: gene Location: 116433-118286 bp Feature: domain Description: PRK05658 Location: 116445-118284 bp Feature: domain Description: PRK05658 Location: 116445-1182 84 bp Feature: gene Location: 134542-135756 bp Feature: domain Description: PRK10770 Location: 134554-135748 bp Feature: domain Description: PRK10770 Location: 134554-135748 bp Feature: gene Location: 135815-138586 bp Feature: domain Description: LptD Location: 136010-138572 bp Feature: domain Description: LptD Location: 136010-138572 bp Feature: gene Location: 138719-140431 bp Feature: domain Description: RVT_N Location: 138776-139019 bp Feature: domain Description: RVT_N Location: 138776-139019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139064-139700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139064-139700 bp Feature: domain Description: YkfC Location: 139910-140060 bp Feature: domain Description: YkfC Location: 139910-140060 bp Feature: domain Description: HNH Note: nucleases Location: 140237-140375 bp Feature: domain Description: HNH Note: nucleases Location: 1402 37-140375 bp Feature: gene Location: 141704-142720 bp Feature: domain Description: COG3178 Location: 141707-142706 bp Feature: domain Description: COG3178 Location: 141707-142 706 bp Feature: gene Location: 142717-143391 bp Feature: domain Description: NTP_transferase_like_1 Location: 142723-143362 bp Feature: domain Description: NTP_transferase_like_1 Location: 142 72 3-143362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: NSVB01000035.1 (36464 bp)
Overview 1 RT 1: 2046-9357 bp Neighborhood of RT #1 [2046, 10412] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 2046-3185 bp Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: gene Location: 3185-3742 bp Feature: gene Location: 3739-6759 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 423 4-4705 bp Feature: gene Location: 6756-8537 bp Feature: domain Description: YeeA Location: 7623-8403 bp Feature: domain Description: YeeA Location: 7623 -8403 bp Feature: gene Location: 8541-10412 bp Feature: domain Description: DUF262 Location: 8589-9357 bp Feature: domain Description: DUF262 Location: 8589-93 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NSVB01000012.1 (260215 bp)
Overview 1 RT 1: 254387-259916 bp Neighborhood of RT #1 [254387, 260212] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 254387-255931 bp Feature: domain Description: CHD Location: 254603-255017 bp Feature: domain Description: CHD Location: 254 603-255017 bp Feature: domain Description: CHD Location: 255245-255734 bp Feature: domain Description: CHD Location: 25524 5-255734 bp Feature: gene Location: 257015-257194 bp Feature: gene Location: 257926-259194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258139-258796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258139-258796 bp Feature: domain Description: GIIM Note: maturase Location: 258874-259096 bp Feature: domain Description: GIIM Note: maturase Location: 258874 -259096 bp Feature: gene Location: 259583-260212 bp Feature: domain Description: DUF772 Location: 259721-259916 bp Feature: domain Description: DUF772 Location: 259721-259916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)