myRT

myRT report for GCA_003837765.1_ASM383776v1

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Seq: NSVE01000016.1 (206557 bp)
Overview 1 RT 1: 93356-98937 bp Neighborhood of RT #1 [93356, 98942] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 93356-93550 bp Feature: gene Location: 93689-93943 bp Feature: domain Description: SdhE Location: 93695-93935 bp Feature: domain Description: SdhE Location: 93695-93935 bp Feature: gene Location: 94019-95338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94022-94598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94022-94598 bp Feature: domain Description: YkfC Location: 94796-94952 bp Feature: domain Description: YkfC Location: 94796-94952 bp Feature: domain Description: HNH Note: nucleases Location: 95135-95273 bp Feature: domain Description: HNH Note: nucleases Location: 951 35-95273 bp Feature: gene Location: 97061-98005 bp Feature: domain Description: YgfZ Location: 97070-97970 bp Feature: domain Description: YgfZ Location: 97070-97970 bp Feature: gene Location: 98106-98942 bp Feature: domain Description: HDOD Location: 98109-98937 bp Feature: domain Description: HDOD Location: 981 09-98937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: NSVE01000034.1 (36393 bp)
Overview 1 RT 1: 2046-9357 bp Neighborhood of RT #1 [2046, 10412] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 2046-3185 bp Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_2 1 Location: 2 118-2 187 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: domain Description: AAA_2 1 Location: 2 661-2 991 bp Feature: gene Location: 3185-3742 bp Feature: gene Location: 3739-6759 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 42 34-4705 bp Feature: gene Location: 6756-8537 bp Feature: domain Description: YeeA Location: 7623-8403 bp Feature: domain Description: YeeA Location: 762 3-8403 bp Feature: gene Location: 8541-10412 bp Feature: domain Description: DUF262 Location: 8589-9357 bp Feature: domain Description: DUF2 62 Location: 8589-9357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NSVE01000010.1 (260923 bp)
Overview 1 RT 1: 255095-260624 bp Neighborhood of RT #1 [255095, 260920] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 255095-256639 bp Feature: domain Description: CHD Location: 255311-255725 bp Feature: domain Description: CHD Location: 2553 11-255725 bp Feature: domain Description: CHD Location: 255953-256442 bp Feature: domain Description: CHD Location: 255953 -256442 bp Feature: gene Location: 257723-257902 bp Feature: gene Location: 258634-259902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258847-259504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258847-259504 bp Feature: domain Description: GIIM Note: maturase Location: 259582-259804 bp Feature: domain Description: GIIM Note: maturase Location: 259582-259804 bp Feature: gene Location: 260291-260920 bp Feature: domain Description: DUF772 Location: 260429-260624 bp Feature: domain Description: DUF772 Location: 260429-260624 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NSVE01000003.1 (491125 bp)
Overview 1 RT 1: 49563-58404 bp 2 RT 2: 74667-88588 bp Neighborhood of RT #1 [49563, 58412] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74667, 88743] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49563-50237 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 9569-50208 bp Feature: gene Location: 50234-51250 bp Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: gene Location: 52523-54235 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: YkfC Location: 53714 -53864 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: domain Description: HNH Note: nucleases Location: 54 04 1-54 179 bp Feature: gene Location: 54368-57139 bp Feature: domain Description: LptD Location: 54563-57125 bp Feature: domain Description: LptD Location: 54 563-57125 bp Feature: gene Location: 57198-58412 bp Feature: domain Description: PRK10770 Location: 57210-58404 bp Feature: domain Description: PRK10770 Location: 57210-584 04 bp Feature: gene Location: 74667-76520 bp Feature: domain Description: PRK05658 Location: 74679-76518 bp Feature: domain Description: PRK05658 Location: 74 679-76518 bp Feature: gene Location: 76627-80364 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76735-77392 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76735-77392 bp Feature: domain Description: PRK09776 Location: 77605-78076 bp Feature: domain Description: PRK09776 Location: 77605-78076 bp Feature: domain Description: PAS Location: 78133-78658 bp Feature: domain Description: PAS Location: 78133-78658 bp Feature: domain Description: PRK10060 Location: 78670-80314 bp Feature: domain Description: PRK10060 Location: 78670-80314 bp Feature: gene Location: 81445-83130 bp Feature: domain Description: RVT_N Location: 81502-81742 bp Feature: domain Description: RVT_N Location: 81502-8174 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81790-82426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81790-824 26 bp Feature: domain Description: GIIM Note: maturase Location: 82480-82711 bp Feature: domain Description: GIIM Note: maturase Location: 824 80-82711 bp Feature: domain Description: HNH Note: nucleases Location: 82963-83101 bp Feature: domain Description: HNH Note: nucleases Location: 82963-83101 bp Feature: gene Location: 83853-84974 bp Feature: domain Description: COG3177 Location: 83871-84963 bp Feature: domain Description: COG3177 Location: 83871-84 963 bp Feature: gene Location: 86017-88743 bp Feature: domain Description: IMPa_N_2 Location: 86224-86806 bp Feature: domain Description: IMPa_N_2 Location: 86224 -86806 bp Feature: domain Description: IMPa_helical Location: 86887-87214 bp Feature: domain Description: IMPa_helical Location: 86887-87214 bp Feature: domain Description: Peptidase_M60 Location: 87658-88588 bp Feature: domain Description: Peptidase_M60 Location: 87658-88588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)