myRT

myRT report for GCA_003837805.1_ASM383780v1

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Seq: RQIT01000032.1 (69961 bp)
Overview 1 RT 1: 638-3356 bp 2 RT 2: 48004-52850 bp Neighborhood of RT #1 [638, 4588] RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Tnp_DNA_bind Neighborhood of RT #2 [48004, 52850] Transposase_mut RVT-GII Feature: gene Location: 638-1933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923-1553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923-1 553 bp Feature: domain Description: GIIM Note: maturase Location: 1631-1850 bp Feature: domain Description: GIIM Note: maturase Location: 1 631 -1 850 bp Feature: gene Location: 1809-2951 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2115-2784 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 1 5-2784 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2805-2916 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2805-291 6 bp Feature: gene Location: 3113-4588 bp Feature: domain Description: Tnp_DNA_bind Location: 3185-3356 bp Feature: domain Description: Tnp_DNA_bind Location: 31 85-3356 bp Feature: gene Location: 48004-49203 bp Feature: domain Description: Transposase_mut Location: 48016-49117 bp Feature: domain Description: Transposase_mut Location: 4801 6-491 1 7 bp Feature: gene Location: 49468-49665 bp Feature: gene Location: 49689-51071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50016-50706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5001 6-50706 bp Feature: gene Location: 51299-52207 bp Feature: gene Location: 52542-52850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Tnp_DNA_bind (pfam14706), Transposase_mut (pfam00872)

Seq: RQIT01000018.1 (147217 bp)
Overview 1 RT 1: 9001-16417 bp Neighborhood of RT #1 [9001, 16417] NDUFA9_like_SDR_a Phage_int_SAM_4 INT_C_like_1 RVT-UG8 McrBC Feature: gene Location: 9001-9966 bp Feature: domain Description: NDUFA9_like_SDR_a Location: 9028-9829 bp Feature: domain Description: NDUFA9_like_SDR_a Location: 902 8-982 9 bp Feature: gene Location: 10296-11954 bp Feature: domain Description: Phage_int_SAM_4 Location: 11043-11277 bp Feature: domain Description: Phage_int_SAM_4 Location: 11043-112 77 bp Feature: domain Description: INT_C_like_1 Location: 11412-11892 bp Feature: domain Description: INT_C_like_1 Location: 11412 -11892 bp Feature: gene Location: 13434-15308 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 13878-14325 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 13878-1432 5 bp Feature: gene Location: 15515-16252 bp Feature: domain Description: McrBC Location: 15518-16100 bp Feature: domain Description: McrBC Location: 15518-16100 bp Feature: gene Location: 16271-16417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NDUFA9_like_SDR_a (cd05271), Phage_int_SAM_4 (pfam13495), INT_C_like_1 (cd01184), RVT-UG8, McrBC (pfam10117)

Seq: RQIT01000028.1 (99902 bp)
Overview 1 RT 1: 7343-10861 bp Neighborhood of RT #1 [7343, 10878] HTH_21 PHA02517 RVT-GII rve_3 RhaT Feature: gene Location: 7343-7678 bp Feature: domain Description: HTH_21 Location: 7475-7622 bp Feature: domain Description: HTH_21 Location: 7475-7622 bp Feature: gene Location: 7691-8074 bp Feature: domain Description: PHA02517 Location: 7697-8045 bp Feature: domain Description: PHA02517 Location: 7697-8045 bp Feature: gene Location: 8580-9257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8793-9069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8793 -9069 bp Feature: gene Location: 9315-9578 bp Feature: domain Description: rve_3 Location: 9372-9441 bp Feature: domain Description: rve_3 Location: 93 72-9441 bp Feature: gene Location: 9982-10878 bp Feature: domain Description: RhaT Location: 10048-10861 bp Feature: domain Description: RhaT Location: 10048-10861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, rve_3 (pfam13683), RhaT (TIGR00776)

Seq: RQIT01000060.1 (1849 bp)
Overview 1 RT 1: 217-1718 bp Neighborhood of RT #1 [217, 1813] RVT-GII GIIM Feature: gene Location: 217-345 bp Feature: gene Location: 560-1813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 767-14 21 bp Feature: domain Description: GIIM Note: maturase Location: 1508-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1508-1718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RQIT01000002.1 (818089 bp)
Overview 1 RT 1: 297474-304374 bp Neighborhood of RT #1 [297474, 304374] GT_2_like_c PAP2_BcrC_like RVT-GII Big_6 Big_6 Big_6 Big_6 Big_6 HemolysinCabind Feature: gene Location: 297474-298511 bp Feature: domain Description: GT_2_like_c Location: 297504-298239 bp Feature: domain Description: GT_2_like_c Location: 2975 04-298239 bp Feature: gene Location: 298679-299539 bp Feature: domain Description: PAP2_BcrC_like Location: 298976-299360 bp Feature: domain Description: PAP2_BcrC_like Location: 298976-299360 bp Feature: gene Location: 299806-300318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300007-300286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300007-300286 bp Feature: gene Location: 300753-303596 bp Feature: domain Description: Big_6 Location: 301815-302016 bp Feature: domain Description: Big_6 Location: 301815 -302016 bp Feature: domain Description: Big_6 Location: 302043-302283 bp Feature: domain Description: Big_6 Location: 302043-302283 bp Feature: domain Description: Big_6 Location: 302538-302733 bp Feature: domain Description: Big_6 Location: 3025 38-302733 bp Feature: domain Description: Big_6 Location: 302766-302991 bp Feature: domain Description: Big_6 Location: 302766-302991 bp Feature: domain Description: Big_6 Location: 303087-303261 bp Feature: domain Description: Big_6 Location: 303087-303261 bp Feature: domain Description: HemolysinCabind Location: 303267-303366 bp Feature: domain Description: HemolysinCabind Location: 303267-303366 bp Feature: gene Location: 304228-304374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT_2_like_c (cd04186), PAP2_BcrC_like (cd03385), RVT-GII, Big_6 (pfam17936), HemolysinCabind (pfam00353)