myRT

myRT report for GCA_003838365.1_ASM383836v1

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Seq: NSVH01000031.1 (36464 bp)
Overview 1 RT 1: 2046-9357 bp Neighborhood of RT #1 [2046, 10412] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 2046-3185 bp Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_21 Location: 21 1 8-21 87 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: domain Description: AAA_21 Location: 2661 -2991 bp Feature: gene Location: 3185-3742 bp Feature: gene Location: 3739-6759 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: gene Location: 6756-8537 bp Feature: domain Description: YeeA Location: 7623-8403 bp Feature: domain Description: YeeA Location: 7623-8403 bp Feature: gene Location: 8541-10412 bp Feature: domain Description: DUF262 Location: 8589-9357 bp Feature: domain Description: DUF262 Location: 8589-9357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NSVH01000009.1 (265086 bp)
Overview 1 RT 1: 259258-264787 bp Neighborhood of RT #1 [259258, 265083] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 259258-260802 bp Feature: domain Description: CHD Location: 259474-259888 bp Feature: domain Description: CHD Location: 2 59474-2 59888 bp Feature: domain Description: CHD Location: 260116-260605 bp Feature: domain Description: CHD Location: 2 60116-2 60605 bp Feature: gene Location: 261886-262065 bp Feature: gene Location: 262797-264065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263010-263667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 63010-2 63667 bp Feature: domain Description: GIIM Note: maturase Location: 263745-263967 bp Feature: domain Description: GIIM Note: maturase Location: 2 63745-2 63967 bp Feature: gene Location: 264454-265083 bp Feature: domain Description: DUF772 Location: 264592-264787 bp Feature: domain Description: DUF772 Location: 2 64592 -2 64787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: NSVH01000005.1 (426460 bp)
Overview 1 RT 1: 54959-63800 bp 2 RT 2: 80064-90734 bp Neighborhood of RT #1 [54959, 63808] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [80064, 90799] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 54959-55633 bp Feature: domain Description: NTP_transferase_like_1 Location: 54965-55604 bp Feature: domain Description: NTP_transferase_like_1 Location: 54965-55604 bp Feature: gene Location: 55630-56646 bp Feature: domain Description: COG3178 Location: 55633-56632 bp Feature: domain Description: COG3 178 Location: 5563 3 -5663 2 bp Feature: gene Location: 57919-59631 bp Feature: domain Description: RVT_N Location: 57976-58219 bp Feature: domain Description: RVT_N Location: 57976-58219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58264-58900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58264-58900 bp Feature: domain Description: YkfC Location: 59110-59260 bp Feature: domain Description: YkfC Location: 59110-59260 bp Feature: domain Description: HNH Note: nucleases Location: 59437-59575 bp Feature: domain Description: HNH Note: nucleases Location: 5943 7-59575 bp Feature: gene Location: 59764-62535 bp Feature: domain Description: LptD Location: 59959-62521 bp Feature: domain Description: LptD Location: 59959-62521 bp Feature: gene Location: 62594-63808 bp Feature: domain Description: PRK10770 Location: 62606-63800 bp Feature: domain Description: PRK10770 Location: 62606-63 800 bp Feature: gene Location: 80064-81917 bp Feature: domain Description: PRK05658 Location: 80076-81915 bp Feature: domain Description: PRK05658 Location: 80076-81915 bp Feature: gene Location: 82024-85761 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 82132-82789 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 8213 2-82789 bp Feature: domain Description: PRK09776 Location: 83002-83473 bp Feature: domain Description: PRK09776 Location: 83 002-83 473 bp Feature: domain Description: PAS Location: 83530-84055 bp Feature: domain Description: PAS Location: 83 53 0-84055 bp Feature: domain Description: PRK10060 Location: 84067-85711 bp Feature: domain Description: PRK10060 Location: 84067-85711 bp Feature: gene Location: 86842-88527 bp Feature: domain Description: RVT_N Location: 86899-87139 bp Feature: domain Description: RVT_N Location: 86899-8713 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87187-87823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87187-87823 bp Feature: domain Description: GIIM Note: maturase Location: 87877-88108 bp Feature: domain Description: GIIM Note: maturase Location: 87877-88108 bp Feature: domain Description: HNH Note: nucleases Location: 88360-88498 bp Feature: domain Description: HNH Note: nucleases Location: 883 60-88498 bp Feature: gene Location: 89250-90371 bp Feature: domain Description: COG3177 Location: 89268-90360 bp Feature: domain Description: COG3 177 Location: 89268-903 60 bp Feature: gene Location: 90584-90799 bp Feature: domain Description: NERD Location: 90611-90734 bp Feature: domain Description: NERD Location: 90611-9073 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: NSVH01000018.1 (160125 bp)
Overview 1 RT 1: 68376-73957 bp Neighborhood of RT #1 [68376, 73962] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 68376-68570 bp Feature: gene Location: 68709-68963 bp Feature: domain Description: SdhE Location: 68715-68955 bp Feature: domain Description: SdhE Location: 68715-68955 bp Feature: gene Location: 69039-70358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69042-69618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6904 2-69618 bp Feature: domain Description: YkfC Location: 69816-69972 bp Feature: domain Description: YkfC Location: 69816-69972 bp Feature: domain Description: HNH Note: nucleases Location: 70155-70293 bp Feature: domain Description: HNH Note: nucleases Location: 70155-70293 bp Feature: gene Location: 72081-73025 bp Feature: domain Description: YgfZ Location: 72090-72990 bp Feature: domain Description: YgfZ Location: 72090-72990 bp Feature: gene Location: 73126-73962 bp Feature: domain Description: HDOD Location: 73129-73957 bp Feature: domain Description: HDOD Location: 73129-73957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)