myRT

myRT report for GCA_003838455.1_ASM383845v1

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Seq: NSVG01000004.1 (471017 bp)
Overview 1 RT 1: 49563-58404 bp 2 RT 2: 74668-88589 bp Neighborhood of RT #1 [49563, 58412] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74668, 88744] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49563-50237 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: gene Location: 50234-51250 bp Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: domain Description: COG31 78 Location: 50237-51 236 bp Feature: gene Location: 52523-54235 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: YkfC Location: 5371 4-53864 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: domain Description: HNH Note: nucleases Location: 54041 -541 79 bp Feature: gene Location: 54368-57139 bp Feature: domain Description: LptD Location: 54563-57125 bp Feature: domain Description: LptD Location: 54563-571 25 bp Feature: gene Location: 57198-58412 bp Feature: domain Description: PRK10770 Location: 57210-58404 bp Feature: domain Description: PRK1 0770 Location: 5721 0-58404 bp Feature: gene Location: 74668-76521 bp Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: domain Description: PRK05658 Location: 74680-7651 9 bp Feature: gene Location: 76628-80365 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PAS Location: 78134-78659 bp Feature: domain Description: PAS Location: 781 34-78659 bp Feature: domain Description: PRK10060 Location: 78671-80315 bp Feature: domain Description: PRK1 0060 Location: 78671 -8031 5 bp Feature: gene Location: 81446-83131 bp Feature: domain Description: RVT_N Location: 81503-81743 bp Feature: domain Description: RVT_N Location: 81 503-81 743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 791 -82427 bp Feature: domain Description: GIIM Note: maturase Location: 82481-82712 bp Feature: domain Description: GIIM Note: maturase Location: 82481 -8271 2 bp Feature: domain Description: HNH Note: nucleases Location: 82964-83102 bp Feature: domain Description: HNH Note: nucleases Location: 82964-831 02 bp Feature: gene Location: 83854-84975 bp Feature: domain Description: COG3177 Location: 83872-84964 bp Feature: domain Description: COG31 77 Location: 83872-84964 bp Feature: gene Location: 86018-88744 bp Feature: domain Description: IMPa_N_2 Location: 86225-86807 bp Feature: domain Description: IMPa_N_2 Location: 86225-86807 bp Feature: domain Description: IMPa_helical Location: 86888-87215 bp Feature: domain Description: IMPa_helical Location: 86888-8721 5 bp Feature: domain Description: Peptidase_M60 Location: 87659-88589 bp Feature: domain Description: Peptidase_M60 Location: 87659-88589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: NSVG01000031.1 (36459 bp)
Overview 1 RT 1: 2041-9352 bp Neighborhood of RT #1 [2041, 10407] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 2041-3180 bp Feature: domain Description: AAA_21 Location: 2113-2182 bp Feature: domain Description: AAA_2 1 Location: 2 113-2 182 bp Feature: domain Description: AAA_21 Location: 2656-2986 bp Feature: domain Description: AAA_2 1 Location: 2 656-2 986 bp Feature: gene Location: 3180-3737 bp Feature: gene Location: 3734-6754 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4229-4700 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 42 2 9-4700 bp Feature: gene Location: 6751-8532 bp Feature: domain Description: YeeA Location: 7618-8398 bp Feature: domain Description: YeeA Location: 7618-8398 bp Feature: gene Location: 8536-10407 bp Feature: domain Description: DUF262 Location: 8584-9352 bp Feature: domain Description: DUF2 62 Location: 8584-9352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: NSVG01000010.1 (262899 bp)
Overview 1 RT 1: 81852-87433 bp Neighborhood of RT #1 [81852, 87438] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 81852-82046 bp Feature: gene Location: 82185-82439 bp Feature: domain Description: SdhE Location: 82191-82431 bp Feature: domain Description: SdhE Location: 82191-8243 1 bp Feature: gene Location: 82515-83834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82518-83094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82518-83 094 bp Feature: domain Description: YkfC Location: 83292-83448 bp Feature: domain Description: YkfC Location: 83 292-83 448 bp Feature: domain Description: HNH Note: nucleases Location: 83631-83769 bp Feature: domain Description: HNH Note: nucleases Location: 83 63 1-83 769 bp Feature: gene Location: 85557-86501 bp Feature: domain Description: YgfZ Location: 85566-86466 bp Feature: domain Description: YgfZ Location: 85566-86466 bp Feature: gene Location: 86602-87438 bp Feature: domain Description: HDOD Location: 86605-87433 bp Feature: domain Description: HDOD Location: 86605-8743 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: NSVG01000011.1 (262389 bp)
Overview 1 RT 1: 256561-262090 bp Neighborhood of RT #1 [256561, 262386] CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 256561-258105 bp Feature: domain Description: CHD Location: 256777-257191 bp Feature: domain Description: CHD Location: 256777-257191 bp Feature: domain Description: CHD Location: 257419-257908 bp Feature: domain Description: CHD Location: 2574 19-257908 bp Feature: gene Location: 259189-259368 bp Feature: gene Location: 260100-261368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260313-260970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260313-260970 bp Feature: domain Description: GIIM Note: maturase Location: 261048-261270 bp Feature: domain Description: GIIM Note: maturase Location: 26104 8-261270 bp Feature: gene Location: 261757-262386 bp Feature: domain Description: DUF772 Location: 261895-262090 bp Feature: domain Description: DUF772 Location: 261895-262090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)