myRT

myRT report for GCA_003838865.1_ASM383886v1

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Seq: NSWK01000001.1 (862309 bp)
Overview 1 RT 1: 851656-858262 bp Neighborhood of RT #1 [851656, 858345] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 851656-853200 bp Feature: domain Description: CHD Location: 851872-852286 bp Feature: domain Description: CHD Location: 851 872-852286 bp Feature: domain Description: CHD Location: 852514-853003 bp Feature: domain Description: CHD Location: 85251 4-853003 bp Feature: gene Location: 854284-854463 bp Feature: gene Location: 855195-856463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855408-856065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855408-856065 bp Feature: domain Description: GIIM Note: maturase Location: 856143-856365 bp Feature: domain Description: GIIM Note: maturase Location: 8561 43-856365 bp Feature: gene Location: 856852-857484 bp Feature: domain Description: DUF772 Location: 856993-857188 bp Feature: domain Description: DUF772 Location: 856993-8571 88 bp Feature: gene Location: 857518-858345 bp Feature: domain Description: ABC_phnC Location: 857548-858262 bp Feature: domain Description: ABC_phnC Location: 857548-858262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: NSWK01000005.1 (416914 bp)
Overview 1 RT 1: 331841-342147 bp 2 RT 2: 358405-367243 bp Neighborhood of RT #1 [331841, 342149] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [358405, 367272] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 331841-332962 bp Feature: domain Description: COG3177 Location: 331859-332951 bp Feature: domain Description: COG3177 Location: 331859-332 951 bp Feature: gene Location: 333221-333358 bp Feature: gene Location: 333686-335371 bp Feature: domain Description: RVT_N Location: 333743-333983 bp Feature: domain Description: RVT_N Location: 333743-333983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334031-334667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334031-334667 bp Feature: domain Description: GIIM Note: maturase Location: 334721-334952 bp Feature: domain Description: GIIM Note: maturase Location: 33472 1-334952 bp Feature: domain Description: HNH Note: nucleases Location: 335204-335342 bp Feature: domain Description: HNH Note: nucleases Location: 3352 04-335342 bp Feature: gene Location: 336452-340189 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 336560-337217 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 336560-3372 17 bp Feature: domain Description: PRK09776 Location: 337430-337901 bp Feature: domain Description: PRK09776 Location: 337430-337901 bp Feature: domain Description: PAS Location: 337958-338483 bp Feature: domain Description: PAS Location: 337958-338483 bp Feature: domain Description: PRK10060 Location: 338492-340139 bp Feature: domain Description: PRK10060 Location: 338492 -340139 bp Feature: gene Location: 340296-342149 bp Feature: domain Description: PRK05658 Location: 340308-342147 bp Feature: domain Description: PRK05658 Location: 340308-342 147 bp Feature: gene Location: 358405-359619 bp Feature: domain Description: PRK10770 Location: 358417-359611 bp Feature: domain Description: PRK10770 Location: 358417-359611 bp Feature: gene Location: 359678-362467 bp Feature: domain Description: LptD Location: 359873-362453 bp Feature: domain Description: LptD Location: 359873-362 453 bp Feature: gene Location: 362600-364312 bp Feature: domain Description: RVT_N Location: 362657-362900 bp Feature: domain Description: RVT_N Location: 362 657-362 900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362945-363581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362 945-363581 bp Feature: domain Description: YkfC Location: 363788-363941 bp Feature: domain Description: YkfC Location: 363788-363941 bp Feature: domain Description: HNH Note: nucleases Location: 364118-364256 bp Feature: domain Description: HNH Note: nucleases Location: 364118-3642 56 bp Feature: gene Location: 365585-366601 bp Feature: domain Description: COG3178 Location: 365588-366587 bp Feature: domain Description: COG3178 Location: 365588-366587 bp Feature: gene Location: 366598-367272 bp Feature: domain Description: NTP_transferase_like_1 Location: 366604-367243 bp Feature: domain Description: NTP_transferase_like_1 Location: 366604-3672 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: NSWK01000006.1 (400618 bp)
Overview 1 RT 1: 311197-318446 bp Neighborhood of RT #1 [311197, 318508] HxlR PRK06333 RVT-UG2 YHI9 STN TonB-siderophor Feature: gene Location: 311197-311703 bp Feature: domain Description: HxlR Location: 311221-311539 bp Feature: domain Description: HxlR Location: 3 11221-3 1153 9 bp Feature: gene Location: 311812-313080 bp Feature: domain Description: PRK06333 Location: 311818-313075 bp Feature: domain Description: PRK063 3 3 Location: 3 11818-3 13 075 bp Feature: gene Location: 313579-314925 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 313828-314614 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3 13 828-3 14614 bp Feature: gene Location: 315109-315945 bp Feature: domain Description: YHI9 Location: 315121-315937 bp Feature: domain Description: YHI9 Location: 3 15121-3 1593 7 bp Feature: gene Location: 316106-318508 bp Feature: domain Description: STN Location: 316226-316379 bp Feature: domain Description: STN Location: 3 16226-3 163 79 bp Feature: domain Description: TonB-siderophor Location: 316487-318446 bp Feature: domain Description: TonB-siderophor Location: 3 16487-3 18446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HxlR (pfam01638), PRK06333 (beta-ketoacyl-ACP synthase), RVT-UG2, YHI9 (COG0384), STN (smart00965), TonB-siderophor (TIGR01783)

Seq: NSWK01000010.1 (222340 bp)
Overview 1 RT 1: 41453-45499 bp Neighborhood of RT #1 [41453, 45528] RVT-GII GIIM DUF3085 Feature: gene Location: 41453-42169 bp Feature: gene Location: 42524-43168 bp Feature: gene Location: 42761-43960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42926-43541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2926-4 354 1 bp Feature: domain Description: GIIM Note: maturase Location: 43598-43814 bp Feature: domain Description: GIIM Note: maturase Location: 4 3598-4 3814 bp Feature: gene Location: 44300-45097 bp Feature: gene Location: 45163-45528 bp Feature: domain Description: DUF3085 Location: 45229-45499 bp Feature: domain Description: DUF3085 Location: 4 5229-4 54 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3085 (pfam11284)