myRT

myRT report for GCA_003860935.1_ASM386093v1

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Seq: RDAH01000002.1 (232086 bp)
Overview 1 RT 1: 18916-21587 bp 2 RT 2: 124946-128084 bp 3 RT 3: 155267-158468 bp 4 RT 4: 216875-220247 bp Neighborhood of RT #1 [18916, 21587] PRK10276 group_II_RT_mat RVT-GII Neighborhood of RT #2 [124946, 128084] InsE PHA02517 RVT-GII group_II_RT_mat Neighborhood of RT #3 [155267, 158468] PHA02517 RVT-GII GIIM Neighborhood of RT #4 [216875, 220247] PRK10276 RVT-GII RVT-GII Feature: gene Location: 18916-19659 bp Feature: domain Description: PRK10276 Location: 19411-19624 bp Feature: domain Description: PRK1 0276 Location: 1 941 1 -1 9624 bp Feature: gene Location: 19594-20082 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 19834-20026 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 9834-20026 bp Feature: gene Location: 20106-20903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20115-20736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 1 5-20736 bp Feature: gene Location: 21012-21164 bp Feature: gene Location: 21357-21587 bp Feature: gene Location: 124946-125248 bp Feature: domain Description: InsE Location: 124955-125237 bp Feature: domain Description: InsE Location: 1 24955-1 25237 bp Feature: gene Location: 125291-125698 bp Feature: domain Description: PHA02517 Location: 125444-125633 bp Feature: domain Description: PHA0251 7 Location: 1 25444-1 25633 bp Feature: gene Location: 126290-127225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126563-127202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 26563-1 27202 bp Feature: gene Location: 127240-127812 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 127246-127558 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 27246-1 27558 bp Feature: gene Location: 127899-128084 bp Feature: gene Location: 155267-155473 bp Feature: gene Location: 155648-156052 bp Feature: domain Description: PHA02517 Location: 155651-156041 bp Feature: domain Description: PHA0251 7 Location: 1 55651 -1 56041 bp Feature: gene Location: 156217-157740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156490-157222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 56490-1 57222 bp Feature: domain Description: GIIM Note: maturase Location: 157297-157495 bp Feature: domain Description: GIIM Note: maturase Location: 1 57297-1 57495 bp Feature: gene Location: 157879-158028 bp Feature: gene Location: 158031-158468 bp Feature: gene Location: 216875-217192 bp Feature: gene Location: 217300-217539 bp Feature: domain Description: PRK10276 Location: 217303-217504 bp Feature: domain Description: PRK1 0276 Location: 21 7303-21 7504 bp Feature: gene Location: 217779-218936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218388-218754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8388-21 8754 bp Feature: gene Location: 218636-219517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218804-219125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8804-21 91 25 bp Feature: gene Location: 219403-219981 bp Feature: gene Location: 220038-220247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), group_II_RT_mat (TIGR04416), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)

Seq: RDAH01000001.1 (5453909 bp)
Overview 1 RT 1: 2496606-2503379 bp Neighborhood of RT #1 [2496606, 2503474] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 2496606-2497271 bp Feature: domain Description: INT_P4_C Location: 2496711-2497269 bp Feature: domain Description: INT_P4_C Location: 2 496711-2 4972 69 bp Feature: gene Location: 2497532-2497972 bp Feature: domain Description: Integrase_1 Location: 2497538-2497754 bp Feature: domain Description: Integrase_1 Location: 2 497538-2 497754 bp Feature: gene Location: 2498029-2500107 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2498437-2498881 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 498437-2 498881 bp Feature: gene Location: 2500107-2502716 bp Feature: domain Description: FimD Location: 2500164-2502705 bp Feature: domain Description: FimD Location: 2 500164-2 502 705 bp Feature: gene Location: 2502797-2503474 bp Feature: domain Description: FimC Location: 2502845-2503379 bp Feature: domain Description: FimC Location: 2 502 845-2 503379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)