myRT

myRT report for GCA_003861185.1_ASM386118v1

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Seq: RDAI01000005.1 (5451575 bp)
Overview 1 RT 1: 477333-479623 bp 2 RT 2: 4739160-4742618 bp 3 RT 3: 4871145-4873035 bp 4 RT 4: 4898163-4903212 bp 5 RT 5: 4979244-4982277 bp Neighborhood of RT #1 [477333, 479623] PRK10276 RVT-GII RVT-GII Neighborhood of RT #2 [4739160, 4742620] RVT-GII PRK10276 umuC Neighborhood of RT #3 [4871145, 4873040] RVT-GII group_II_RT_mat PRK10597 Neighborhood of RT #4 [4898163, 4903214] ArabFuran-catal PinE RVT-GII PRK10276 umuC Neighborhood of RT #5 [4979244, 4982277] Laminin_G_3 RVT-GII group_II_RT_mat Feature: gene Location: 477333-477650 bp Feature: domain Description: PRK10276 Location: 477339-477453 bp Feature: domain Description: PRK1 0276 Location: 477339-477453 bp Feature: gene Location: 477650-478051 bp Feature: gene Location: 478088-478570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478091-478205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478091 -478205 bp Feature: gene Location: 478246-478470 bp Feature: gene Location: 478570-479145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478669-479038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478669-479038 bp Feature: gene Location: 479184-479447 bp Feature: gene Location: 479456-479623 bp Feature: gene Location: 4739160-4739372 bp Feature: gene Location: 4739269-4739634 bp Feature: gene Location: 4739673-4740854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4739772-4740462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4739772-4740462 bp Feature: gene Location: 4740933-4741352 bp Feature: domain Description: PRK10276 Location: 4740936-4741347 bp Feature: domain Description: PRK1 0276 Location: 4740936-4741 347 bp Feature: gene Location: 4741355-4742620 bp Feature: domain Description: umuC Location: 4741358-4742618 bp Feature: domain Description: umuC Location: 4741 358-474261 8 bp Feature: gene Location: 4871145-4872125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4871652-4872018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4871 652-487201 8 bp Feature: gene Location: 4872369-4872728 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4872378-4872594 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4872378-4872594 bp Feature: gene Location: 4872807-4873040 bp Feature: domain Description: PRK10597 Location: 4872810-4873035 bp Feature: domain Description: PRK1 0597 Location: 487281 0-4873035 bp Feature: gene Location: 4898163-4899077 bp Feature: domain Description: ArabFuran-catal Location: 4898265-4898469 bp Feature: domain Description: ArabFuran-catal Location: 4898265-4898469 bp Feature: gene Location: 4899110-4899361 bp Feature: domain Description: PinE Location: 4899161-4899353 bp Feature: domain Description: PinE Location: 48991 61 -4899353 bp Feature: gene Location: 4899757-4901448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4900369-4901056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4900369-4901 056 bp Feature: gene Location: 4901528-4901947 bp Feature: domain Description: PRK10276 Location: 4901531-4901942 bp Feature: domain Description: PRK1 0276 Location: 4901 531 -4901 942 bp Feature: gene Location: 4901949-4903214 bp Feature: domain Description: umuC Location: 4901952-4903212 bp Feature: domain Description: umuC Location: 4901 952-490321 2 bp Feature: gene Location: 4979244-4979972 bp Feature: domain Description: Laminin_G_3 Location: 4979304-4979604 bp Feature: domain Description: Laminin_G_3 Location: 4979304-4979604 bp Feature: gene Location: 4980226-4980435 bp Feature: gene Location: 4980735-4981562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4980834-4981446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4980834-4981 446 bp Feature: gene Location: 4981586-4981915 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4981592-4981781 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4981 592-4981 781 bp Feature: gene Location: 4981993-4982277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, umuC (PRK03609), group_II_RT_mat (TIGR04416), PRK10597 (DNA damage-inducible protein I; Provisional), ArabFuran-catal (pfam09206), PinE (COG1961), Laminin_G_3 (pfam13385)

Seq: RDAI01000001.1 (130609 bp)
Overview 1 RT 1: 1581-4981 bp 2 RT 2: 100859-104625 bp Neighborhood of RT #1 [1581, 4981] PRK10276 RVT-GII RVT-GII Neighborhood of RT #2 [100859, 104625] umuC PRK10276 RVT-GII Feature: gene Location: 1581-1802 bp Feature: gene Location: 2056-2283 bp Feature: domain Description: PRK10276 Location: 2059-2260 bp Feature: domain Description: PRK102 76 Location: 2 059-2 2 60 bp Feature: gene Location: 2729-3610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134-3503 bp Feature: gene Location: 3610-4251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3613-3823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3613-382 3 bp Feature: gene Location: 4442-4672 bp Feature: gene Location: 4736-4981 bp Feature: gene Location: 100859-102130 bp Feature: domain Description: umuC Location: 100862-102125 bp Feature: domain Description: umuC Location: 100862 -102 12 5 bp Feature: gene Location: 102130-102555 bp Feature: domain Description: PRK10276 Location: 102133-102541 bp Feature: domain Description: PRK102 76 Location: 102 133-102 541 bp Feature: gene Location: 102828-104087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103359-103971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103359-103971 bp Feature: gene Location: 104185-104319 bp Feature: gene Location: 104356-104625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, umuC (PRK03609)

Seq: RDAI01000002.1 (82424 bp)
Overview 1 RT 1: 10525-13682 bp 2 RT 2: 52345-56716 bp 3 RT 3: 72451-74810 bp Neighborhood of RT #1 [10525, 13720] RVT-GII PRK10276 umuC Neighborhood of RT #2 [52345, 56832] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Neighborhood of RT #3 [72451, 74827] RVT-GII PRK10276 Feature: gene Location: 10525-10794 bp Feature: gene Location: 10863-11114 bp Feature: gene Location: 11212-12444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-12328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11716-123 28 bp Feature: gene Location: 12803-13111 bp Feature: domain Description: PRK10276 Location: 12806-13097 bp Feature: domain Description: PRK10276 Location: 12806-13 097 bp Feature: gene Location: 13178-13720 bp Feature: domain Description: umuC Location: 13181-13682 bp Feature: domain Description: umuC Location: 13 181-13 682 bp Feature: gene Location: 52345-52647 bp Feature: domain Description: InsE Location: 52354-52636 bp Feature: domain Description: InsE Location: 523 54-5263 6 bp Feature: gene Location: 52674-53099 bp Feature: domain Description: PHA02517 Location: 52698-53034 bp Feature: domain Description: PHA02517 Location: 52698-53 03 4 bp Feature: gene Location: 53691-55214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53964-54696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 964-54696 bp Feature: domain Description: GIIM Note: maturase Location: 54771-54969 bp Feature: domain Description: GIIM Note: maturase Location: 54771-54969 bp Feature: gene Location: 55379-55537 bp Feature: domain Description: PHA02517 Location: 55382-55502 bp Feature: domain Description: PHA02517 Location: 553 82-55502 bp Feature: gene Location: 55756-56832 bp Feature: domain Description: COG3547 Location: 55795-56716 bp Feature: domain Description: COG3 547 Location: 55795-56716 bp Feature: gene Location: 72451-72762 bp Feature: gene Location: 72786-73004 bp Feature: gene Location: 73111-74091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73615-73984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 615-73 984 bp Feature: gene Location: 74145-74330 bp Feature: gene Location: 74396-74827 bp Feature: domain Description: PRK10276 Location: 74447-74810 bp Feature: domain Description: PRK10276 Location: 74447-74810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), COG3547 (Transposase )