myRT

myRT report for GCA_003861515.1_ASM386151v1

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Seq: RDAF01000002.1 (55829 bp)
Overview 1 RT 1: 24673-28975 bp Neighborhood of RT #1 [24673, 29034] DDE_Tnp_IS1 InsA RVT-GII RVT-GII PRK10276 umuC Feature: gene Location: 24673-25050 bp Feature: domain Description: DDE_Tnp_IS1 Location: 24676-25048 bp Feature: domain Description: DDE_Tnp_IS1 Location: 24676-25048 bp Feature: gene Location: 25095-25370 bp Feature: domain Description: InsA Location: 25098-25362 bp Feature: domain Description: InsA Location: 25098-25362 bp Feature: gene Location: 25404-26252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25428-25746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25428-25746 bp Feature: gene Location: 26401-26850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26656-26800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26656-26800 bp Feature: gene Location: 26965-27834 bp Feature: domain Description: PRK10276 Location: 27454-27817 bp Feature: domain Description: PRK1 0276 Location: 27454-2781 7 bp Feature: gene Location: 28111-29034 bp Feature: domain Description: umuC Location: 28117-28975 bp Feature: domain Description: umuC Location: 281 1 7-28975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: RDAF01000004.1 (5519685 bp)
Overview 1 RT 1: 1317919-1321498 bp 2 RT 2: 4925321-4929021 bp 3 RT 3: 5242144-5245904 bp 4 RT 4: 5316835-5320260 bp Neighborhood of RT #1 [1317919, 1321503] YccC PRK10016 RVT-GII dacD Neighborhood of RT #2 [4925321, 4929021] int RVT-GII group_II_RT_mat Neighborhood of RT #3 [5242144, 5245904] BsuBI_PstI_RE_N RVT-GII RVT-GII PRK10597 Neighborhood of RT #4 [5316835, 5320260] RVT-GII PRK10276 Feature: gene Location: 1317919-1318539 bp Feature: domain Description: YccC Location: 1317925-1318495 bp Feature: domain Description: YccC Location: 131792 5-1318495 bp Feature: gene Location: 1318638-1318811 bp Feature: domain Description: PRK10016 Location: 1318644-1318800 bp Feature: domain Description: PRK10016 Location: 1318644-1318800 bp Feature: gene Location: 1319106-1320524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319361-1320051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1319361-132 0051 bp Feature: gene Location: 1320670-1320882 bp Feature: gene Location: 1321189-1321503 bp Feature: domain Description: dacD Location: 1321192-1321498 bp Feature: domain Description: dacD Location: 132 1192 -132 1498 bp Feature: gene Location: 4925321-4925509 bp Feature: gene Location: 4925545-4926597 bp Feature: domain Description: int Location: 4925548-4926547 bp Feature: domain Description: int Location: 492 5548-492 6547 bp Feature: gene Location: 4926882-4927883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4927407-4927776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492 7407-492 7776 bp Feature: gene Location: 4928126-4928770 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4928135-4928351 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 492 8135-492 8351 bp Feature: gene Location: 4928827-4929021 bp Feature: gene Location: 5242144-5242605 bp Feature: domain Description: BsuBI_PstI_RE_N Location: 5242177-5242579 bp Feature: domain Description: BsuBI_PstI_RE_N Location: 52 42 177-52 42 579 bp Feature: gene Location: 5243805-5244071 bp Feature: gene Location: 5243705-5244685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5244209-5244578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 442 09-52 44578 bp Feature: gene Location: 5244685-5245290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5244688-5244898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 44688-52 44898 bp Feature: gene Location: 5245369-5245602 bp Feature: domain Description: PRK10597 Location: 5245372-5245597 bp Feature: domain Description: PRK10597 Location: 52 45372 -52 45597 bp Feature: gene Location: 5245647-5245904 bp Feature: gene Location: 5316835-5316981 bp Feature: gene Location: 5317435-5317701 bp Feature: gene Location: 5317335-5318921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317839-5318529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5317839-531852 9 bp Feature: gene Location: 5319000-5319419 bp Feature: domain Description: PRK10276 Location: 5319003-5319414 bp Feature: domain Description: PRK102 76 Location: 5319003-5319414 bp Feature: gene Location: 5319637-5320260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), int (PHA02601), group_II_RT_mat (TIGR04416), BsuBI_PstI_RE_N (pfam17728), PRK10597 (DNA damage-inducible protein I; Provisional), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)