myRT

myRT report for GCA_003863675.1_ASM386367v1

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Seq: RRBF01000259.1 (1333 bp)
Overview 1 RT 1: 150-582 bp Neighborhood of RT #1 [150, 1331] RVT-UG5 Feature: gene Location: 150-1331 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 153-582 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 53-582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5

Seq: RRBF01000269.1 (1176 bp)
Overview 1 RT 1: 1-1173 bp Neighborhood of RT #1 [1, 1175] RVT_N RVT-GII Feature: gene Location: 1-138 bp Feature: gene Location: 337-465 bp Feature: gene Location: 735-1175 bp Feature: domain Description: RVT_N Location: 792-1029 bp Feature: domain Description: RVT_N Location: 792 -102 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080-1173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: RRBF01000057.1 (43682 bp)
Overview 1 RT 1: 3837-15084 bp Neighborhood of RT #1 [3837, 15086] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 3837-4607 bp Feature: domain Description: NERD Location: 3936-4269 bp Feature: domain Description: NERD Location: 3 93 6-4269 bp Feature: domain Description: zf-C4_Topoisom Location: 4488-4602 bp Feature: domain Description: zf-C4_Topoisom Location: 4488-4602 bp Feature: gene Location: 4779-5900 bp Feature: domain Description: COG3177 Location: 4797-5889 bp Feature: domain Description: COG3 177 Location: 4797-5889 bp Feature: gene Location: 6623-8308 bp Feature: domain Description: RVT_N Location: 6680-6920 bp Feature: domain Description: RVT_N Location: 6680-6920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6968-7604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6968-7604 bp Feature: domain Description: GIIM Note: maturase Location: 7658-7889 bp Feature: domain Description: GIIM Note: maturase Location: 7658-7889 bp Feature: domain Description: HNH Note: nucleases Location: 8141-8279 bp Feature: domain Description: HNH Note: nucleases Location: 8141-8279 bp Feature: gene Location: 9389-13126 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9497-10154 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 9497-10154 bp Feature: domain Description: PRK09776 Location: 10367-10838 bp Feature: domain Description: PRK09776 Location: 103 67-1083 8 bp Feature: domain Description: PAS Location: 10895-11420 bp Feature: domain Description: PAS Location: 10895-11420 bp Feature: domain Description: PRK10060 Location: 11432-13076 bp Feature: domain Description: PRK10060 Location: 1143 2-13 076 bp Feature: gene Location: 13233-15086 bp Feature: domain Description: PRK05658 Location: 13245-15084 bp Feature: domain Description: PRK05658 Location: 13 245-15084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: RRBF01000258.1 (1365 bp)
Overview 1 RT 1: 86-1316 bp Neighborhood of RT #1 [86, 1363] RVT-GII GIIM HNHc Feature: gene Location: 86-1363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89-641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89-64 1 bp Feature: domain Description: GIIM Note: maturase Location: 695-926 bp Feature: domain Description: GIIM Note: maturase Location: 695-926 bp Feature: domain Description: HNHc Note: nucleases Location: 1160-1316 bp Feature: domain Description: HNHc Note: nucleases Location: 1160-1316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)