myRT

myRT report for GCA_003936035.1_ASM393603v1

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Seq: RHRI01000021.1 (52865 bp)
Overview 1 RT 1: 7353-16854 bp Neighborhood of RT #1 [7353, 17984] Phage_int_SAM_2 Integrase_1 UvrD UvrD RVT-UG14 Cas3''_I N6_N4_Mtase ResIII SF2_C_EcoAI-like Feature: gene Location: 7353-8216 bp Feature: domain Description: Phage_int_SAM_2 Location: 7356-7620 bp Feature: domain Description: Phage_int_SAM_2 Location: 7356-7620 bp Feature: domain Description: Integrase_1 Location: 7665-8049 bp Feature: domain Description: Integrase_1 Location: 7665-8049 bp Feature: gene Location: 8295-10373 bp Feature: domain Description: UvrD Location: 8994-10101 bp Feature: domain Description: UvrD Location: 8994-1 01 01 bp Feature: domain Description: UvrD Location: 10116-10356 bp Feature: domain Description: UvrD Location: 1 01 1 6-1 0356 bp Feature: gene Location: 10382-11932 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 10805-11300 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 1 0805-1 1 300 bp Feature: gene Location: 11948-14884 bp Feature: domain Description: Cas3''_I Location: 12098-12188 bp Feature: domain Description: Cas3''_I Location: 1 2098-1 21 88 bp Feature: domain Description: N6_N4_Mtase Location: 12509-13487 bp Feature: domain Description: N6_N4_Mtase Location: 1 2509-1 3487 bp Feature: gene Location: 14886-17984 bp Feature: domain Description: ResIII Location: 15342-16023 bp Feature: domain Description: ResIII Location: 1 5342-1 6023 bp Feature: domain Description: SF2_C_EcoAI-like Location: 16671-16854 bp Feature: domain Description: SF2_C_EcoAI-like Location: 1 6671 -1 6854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), UvrD (COG0210), RVT-UG14, Cas3''_I (cd10013), N6_N4_Mtase (pfam01555), ResIII (pfam04851), SF2_C_EcoAI-like (cd18799)

Seq: RHRI01000003.1 (409152 bp)
Overview 1 RT 1: 83217-88931 bp Neighborhood of RT #1 [83217, 88939] DUF4870 rph RVT_N RVT-GII YkfC HNHc YicC gmk Feature: gene Location: 83217-83585 bp Feature: domain Description: DUF4870 Location: 83262-83580 bp Feature: domain Description: DUF4870 Location: 832 62 -83580 bp Feature: gene Location: 83603-84325 bp Feature: domain Description: rph Location: 83612-84320 bp Feature: domain Description: rph Location: 83612 -8432 0 bp Feature: gene Location: 84459-86210 bp Feature: domain Description: RVT_N Location: 84519-84762 bp Feature: domain Description: RVT_N Location: 84519-84762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84810-85461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84810-85461 bp Feature: domain Description: YkfC Location: 85665-85833 bp Feature: domain Description: YkfC Location: 85665-85833 bp Feature: domain Description: HNHc Note: nucleases Location: 85995-86151 bp Feature: domain Description: HNHc Note: nucleases Location: 85995-86151 bp Feature: gene Location: 87394-88257 bp Feature: domain Description: YicC Location: 87397-88255 bp Feature: domain Description: YicC Location: 87397-882 55 bp Feature: gene Location: 88271-88939 bp Feature: domain Description: gmk Location: 88331-88931 bp Feature: domain Description: gmk Location: 88331-88931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4870 (pfam09685), rph (PRK00173), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YicC (COG1561), gmk (PRK14738)

Seq: RHRI01000002.1 (409835 bp)
Overview 1 RT 1: 129501-133988 bp Neighborhood of RT #1 [129501, 133988] GstA IS5 RVT-GII GIIM IS5 Feature: gene Location: 129501-130088 bp Feature: domain Description: GstA Location: 129504-130074 bp Feature: domain Description: GstA Location: 129504-13 0074 bp Feature: gene Location: 130226-130765 bp Feature: domain Description: IS5 Location: 130412-130742 bp Feature: domain Description: IS5 Location: 13 0412-13 0742 bp Feature: gene Location: 131258-132526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131471-132128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 1471-13 2128 bp Feature: domain Description: GIIM Note: maturase Location: 132206-132428 bp Feature: domain Description: GIIM Note: maturase Location: 13 2206-13 2428 bp Feature: gene Location: 132598-133056 bp Feature: domain Description: IS5 Location: 132601-133021 bp Feature: domain Description: IS5 Location: 13 2601-13 3 021 bp Feature: gene Location: 133770-133988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GstA (COG0625), IS5 (COG3039), RVT-GII, GIIM (pfam08388)