myRT

myRT report for GCA_003936605.1_ASM393660v1

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Seq: RHVB01000041.1 (24841 bp)
Overview 1 RT 1: 1829-7109 bp Neighborhood of RT #1 [1829, 7801] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 1829-3034 bp Feature: domain Description: Glucosaminidase Location: 2105-2501 bp Feature: domain Description: Glucosaminidase Location: 21 05-2501 bp Feature: domain Description: Peptidase_M23 Location: 2678-2915 bp Feature: domain Description: Peptidase_M23 Location: 2678-291 5 bp Feature: gene Location: 3034-3354 bp Feature: gene Location: 3542-5419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3857-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3857-4595 bp Feature: domain Description: HNHc Note: nucleases Location: 5153-5306 bp Feature: domain Description: HNHc Note: nucleases Location: 51 53-5306 bp Feature: gene Location: 5606-5839 bp Feature: gene Location: 6107-7801 bp Feature: domain Description: VirB4 Location: 6422-7109 bp Feature: domain Description: VirB4 Location: 6422-71 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: RHVB01000111.1 (3375 bp)
Overview 1 RT 1: 61-3343 bp Neighborhood of RT #1 [61, 3372] RVT-AbiP2 HsdM Rve Feature: gene Location: 61-1536 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 409-874 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 409-874 bp Feature: gene Location: 1874-3148 bp Feature: domain Description: HsdM Location: 1895-3125 bp Feature: domain Description: HsdM Location: 1895-312 5 bp Feature: gene Location: 3178-3372 bp Feature: domain Description: Rve Location: 3181-3343 bp Feature: domain Description: Rve Location: 3181-3343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: RHVB01000003.1 (99315 bp)
Overview 1 RT 1: 31499-37699 bp Neighborhood of RT #1 [31499, 37699] INT_ICEBs1_C_like COG2865 RVT-AbiP2 HTH_XRE Feature: gene Location: 31499-32725 bp Feature: domain Description: INT_ICEBs1_C_like Location: 32102-32657 bp Feature: domain Description: INT_ICEBs1_C_like Location: 3 2102-3 2657 bp Feature: gene Location: 33314-34762 bp Feature: domain Description: COG2865 Location: 33320-34718 bp Feature: domain Description: COG2865 Location: 3 3 3 20-3 4718 bp Feature: gene Location: 34908-36404 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 35316-35772 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 53 16-3 5772 bp Feature: gene Location: 36576-36812 bp Feature: domain Description: HTH_XRE Location: 36618-36804 bp Feature: domain Description: HTH_XRE Location: 3 6618-3 6804 bp Feature: gene Location: 36926-37699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-AbiP2, HTH_XRE (smart00530)

Seq: RHVB01000117.1 (2761 bp)
Overview 1 RT 1: 721-2512 bp Neighborhood of RT #1 [721, 2631] RVT-GII HNHc Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054 -1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 234 7-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)