myRT

myRT report for GCA_003936615.1_ASM393661v1

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Seq: RHUX01000025.1 (39488 bp)
Overview 1 RT 1: 5627-10907 bp Neighborhood of RT #1 [5627, 11599] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 5627-6832 bp Feature: domain Description: Glucosaminidase Location: 5903-6299 bp Feature: domain Description: Glucosaminidase Location: 5903-6299 bp Feature: domain Description: Peptidase_M23 Location: 6476-6713 bp Feature: domain Description: Peptidase_M23 Location: 6476-671 3 bp Feature: gene Location: 6832-7152 bp Feature: gene Location: 7340-9217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-8393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-8393 bp Feature: domain Description: HNHc Note: nucleases Location: 8951-9104 bp Feature: domain Description: HNHc Note: nucleases Location: 8951 -91 04 bp Feature: gene Location: 9404-9637 bp Feature: gene Location: 9905-11599 bp Feature: domain Description: VirB4 Location: 10223-10907 bp Feature: domain Description: VirB4 Location: 1 0223-1 0907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: RHUX01000128.1 (2761 bp)
Overview 1 RT 1: 721-2512 bp Neighborhood of RT #1 [721, 2631] RVT-GII HNHc Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2 347-2 512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: RHUX01000119.1 (3373 bp)
Overview 1 RT 1: 43-2672 bp Neighborhood of RT #1 [43, 3334] HsdM RVT-AbiP2 Feature: gene Location: 43-1521 bp Feature: domain Description: HsdM Location: 64-1489 bp Feature: domain Description: HsdM Location: 64-1489 bp Feature: gene Location: 1859-3334 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2207-2672 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2207-2672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: RHUX01000005.1 (98475 bp)
Overview 1 RT 1: 64694-70826 bp Neighborhood of RT #1 [64694, 70894] HTH_XRE RVT-AbiP2 COG2865 INT_ICEBs1_C_like Feature: gene Location: 64694-65467 bp Feature: gene Location: 65581-65817 bp Feature: domain Description: HTH_XRE Location: 65623-65809 bp Feature: domain Description: HTH_XRE Location: 65623-65809 bp Feature: gene Location: 65989-67485 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 66397-66853 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 66397-66853 bp Feature: gene Location: 67631-69079 bp Feature: domain Description: COG2865 Location: 67637-69035 bp Feature: domain Description: COG2865 Location: 67637-69035 bp Feature: gene Location: 69668-70894 bp Feature: domain Description: INT_ICEBs1_C_like Location: 70271-70826 bp Feature: domain Description: INT_ICEBs1_C_like Location: 70271-70826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-AbiP2, COG2865 (Predicted transcriptional regulator, contains HTH domain ), INT_ICEBs1_C_like (cd01189)