myRT

myRT report for GCA_003936705.1_ASM393670v1

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Seq: RHRH01000022.1 (52218 bp)
Overview 1 RT 1: 6889-16390 bp Neighborhood of RT #1 [6889, 17520] Phage_int_SAM_2 Integrase_1 UvrD UvrD RVT-UG14 Cas3''_I N6_N4_Mtase ResIII SF2_C_EcoAI-like Feature: gene Location: 6889-7752 bp Feature: domain Description: Phage_int_SAM_2 Location: 6892-7156 bp Feature: domain Description: Phage_int_SAM_2 Location: 6892-71 56 bp Feature: domain Description: Integrase_1 Location: 7201-7585 bp Feature: domain Description: Integrase_1 Location: 7201 -7585 bp Feature: gene Location: 7831-9909 bp Feature: domain Description: UvrD Location: 8530-9637 bp Feature: domain Description: UvrD Location: 8530-9637 bp Feature: domain Description: UvrD Location: 9652-9892 bp Feature: domain Description: UvrD Location: 9652-9892 bp Feature: gene Location: 9918-11468 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 10341-10836 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 1 0341 -1 0836 bp Feature: gene Location: 11484-14420 bp Feature: domain Description: Cas3''_I Location: 11634-11724 bp Feature: domain Description: Cas3''_I Location: 1 1 634-1 1 724 bp Feature: domain Description: N6_N4_Mtase Location: 12045-13023 bp Feature: domain Description: N6_N4_Mtase Location: 1 2045-1 3023 bp Feature: gene Location: 14422-17520 bp Feature: domain Description: ResIII Location: 14878-15559 bp Feature: domain Description: ResIII Location: 1 4878-1 5559 bp Feature: domain Description: SF2_C_EcoAI-like Location: 16207-16390 bp Feature: domain Description: SF2_C_EcoAI-like Location: 1 6207-1 6390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_2 (pfam12834), Integrase_1 (pfam12835), UvrD (COG0210), RVT-UG14, Cas3''_I (cd10013), N6_N4_Mtase (pfam01555), ResIII (pfam04851), SF2_C_EcoAI-like (cd18799)

Seq: RHRH01000003.1 (409835 bp)
Overview 1 RT 1: 129501-133988 bp Neighborhood of RT #1 [129501, 133988] GstA IS5 RVT-GII GIIM IS5 Feature: gene Location: 129501-130088 bp Feature: domain Description: GstA Location: 129504-130074 bp Feature: domain Description: GstA Location: 12 9504-130074 bp Feature: gene Location: 130226-130765 bp Feature: domain Description: IS5 Location: 130412-130742 bp Feature: domain Description: IS5 Location: 130412 -130742 bp Feature: gene Location: 131258-132526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131471-132128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131471-132 12 8 bp Feature: domain Description: GIIM Note: maturase Location: 132206-132428 bp Feature: domain Description: GIIM Note: maturase Location: 132 2 06-132 42 8 bp Feature: gene Location: 132598-133056 bp Feature: domain Description: IS5 Location: 132601-133021 bp Feature: domain Description: IS5 Location: 132 601-13302 1 bp Feature: gene Location: 133770-133988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GstA (COG0625), IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: RHRH01000002.1 (409960 bp)
Overview 1 RT 1: 84025-89739 bp Neighborhood of RT #1 [84025, 89747] DUF4870 rph RVT_N RVT-GII YkfC HNHc YicC gmk Feature: gene Location: 84025-84393 bp Feature: domain Description: DUF4870 Location: 84070-84388 bp Feature: domain Description: DUF4870 Location: 84070-843 88 bp Feature: gene Location: 84411-85133 bp Feature: domain Description: rph Location: 84420-85128 bp Feature: domain Description: rph Location: 84420-85128 bp Feature: gene Location: 85267-87018 bp Feature: domain Description: RVT_N Location: 85327-85570 bp Feature: domain Description: RVT_N Location: 853 27-85570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85618-86269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85618-86269 bp Feature: domain Description: YkfC Location: 86473-86641 bp Feature: domain Description: YkfC Location: 86473 -86641 bp Feature: domain Description: HNHc Note: nucleases Location: 86803-86959 bp Feature: domain Description: HNHc Note: nucleases Location: 86803 -86959 bp Feature: gene Location: 88202-89065 bp Feature: domain Description: YicC Location: 88205-89063 bp Feature: domain Description: YicC Location: 88205-89063 bp Feature: gene Location: 89079-89747 bp Feature: domain Description: gmk Location: 89139-89739 bp Feature: domain Description: gmk Location: 8913 9-8973 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4870 (pfam09685), rph (PRK00173), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), YicC (COG1561), gmk (PRK14738)