myRT

myRT report for GCA_003937135.1_ASM393713v1

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Seq: RHTT01000024.1 (73467 bp)
Overview 1 RT 1: 31941-38794 bp Neighborhood of RT #1 [31941, 38811] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31941-32606 bp Feature: domain Description: INT_P4_C Location: 32046-32604 bp Feature: domain Description: INT_P4_C Location: 32046-32604 bp Feature: gene Location: 32867-33307 bp Feature: domain Description: Integrase_1 Location: 32873-33089 bp Feature: domain Description: Integrase_1 Location: 32873-33089 bp Feature: gene Location: 33364-35442 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33772-34216 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33772-3421 6 bp Feature: gene Location: 35442-38051 bp Feature: domain Description: FimD Location: 35499-38040 bp Feature: domain Description: FimD Location: 35499-38040 bp Feature: gene Location: 38083-38811 bp Feature: domain Description: FimC Location: 38131-38794 bp Feature: domain Description: FimC Location: 381 31 -38794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: RHTT01000051.1 (13798 bp)
Overview 1 RT 1: 2809-6412 bp Neighborhood of RT #1 [2809, 6537] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2809-3066 bp Feature: gene Location: 3097-3372 bp Feature: gene Location: 3946-5613 bp Feature: domain Description: RVT_N Location: 3994-4231 bp Feature: domain Description: RVT_N Location: 3994-42 31 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4282-4924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 82 -492 4 bp Feature: domain Description: GIIM Note: maturase Location: 4975-5209 bp Feature: domain Description: GIIM Note: maturase Location: 4975-52 09 bp Feature: domain Description: HNHc Note: nucleases Location: 5419-5578 bp Feature: domain Description: HNHc Note: nucleases Location: 5419-5578 bp Feature: gene Location: 5927-6118 bp Feature: gene Location: 6115-6537 bp Feature: domain Description: DUF1380 Location: 6118-6412 bp Feature: domain Description: DUF1380 Location: 6118-6412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: RHTT01000078.1 (1892 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII