myRT

myRT report for GCA_003937285.1_ASM393728v1

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Seq: RHUW01000120.1 (3373 bp)
Overview 1 RT 1: 40-3299 bp Neighborhood of RT #1 [40, 3331] RVT-AbiP2 HsdM Feature: gene Location: 40-1515 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 388-853 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 388-853 bp Feature: gene Location: 1853-3331 bp Feature: domain Description: HsdM Location: 1874-3299 bp Feature: domain Description: HsdM Location: 1 874-3299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: RHUW01000131.1 (2761 bp)
Overview 1 RT 1: 131-1922 bp Neighborhood of RT #1 [131, 2041] RVT-GII HNHc Feature: gene Location: 131-2041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-12 02 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1922 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-192 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: RHUW01000006.1 (86939 bp)
Overview 1 RT 1: 27582-33782 bp Neighborhood of RT #1 [27582, 33782] INT_ICEBs1_C_like COG2865 RVT-AbiP2 HTH_XRE Feature: gene Location: 27582-28808 bp Feature: domain Description: INT_ICEBs1_C_like Location: 28185-28740 bp Feature: domain Description: INT_ICEBs1_C_like Location: 28185-28740 bp Feature: gene Location: 29397-30845 bp Feature: domain Description: COG2865 Location: 29403-30801 bp Feature: domain Description: COG2865 Location: 29403 -3 0801 bp Feature: gene Location: 30991-32487 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31399-31855 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 13 99-3 1855 bp Feature: gene Location: 32659-32895 bp Feature: domain Description: HTH_XRE Location: 32701-32887 bp Feature: domain Description: HTH_XRE Location: 3 2701-3 2887 bp Feature: gene Location: 33009-33782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-AbiP2, HTH_XRE (smart00530)

Seq: RHUW01000025.1 (39488 bp)
Overview 1 RT 1: 5627-10907 bp Neighborhood of RT #1 [5627, 11599] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 5627-6832 bp Feature: domain Description: Glucosaminidase Location: 5903-6299 bp Feature: domain Description: Glucosaminidase Location: 5903-6299 bp Feature: domain Description: Peptidase_M23 Location: 6476-6713 bp Feature: domain Description: Peptidase_M23 Location: 64 76-6713 bp Feature: gene Location: 6832-7152 bp Feature: gene Location: 7340-9217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-8393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7655-8393 bp Feature: domain Description: HNHc Note: nucleases Location: 8951-9104 bp Feature: domain Description: HNHc Note: nucleases Location: 8951-9104 bp Feature: gene Location: 9404-9637 bp Feature: gene Location: 9905-11599 bp Feature: domain Description: VirB4 Location: 10223-10907 bp Feature: domain Description: VirB4 Location: 10223-10907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)