myRT

myRT report for GCA_003937805.1_ASM393780v1

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Seq: RSFA01000069.1 (24658 bp)
Overview 1 RT 1: 8021-15334 bp Neighborhood of RT #1 [8021, 15334] TIGR02646 COG3950 RVT-Retrons DUF285 Feature: gene Location: 8021-8692 bp Feature: domain Description: TIGR02646 Location: 8111-8510 bp Feature: domain Description: TIGR02646 Location: 81 1 1 -851 0 bp Feature: gene Location: 8698-10338 bp Feature: domain Description: COG3950 Location: 8896-10282 bp Feature: domain Description: COG3950 Location: 8896-1 0282 bp Feature: gene Location: 10331-11275 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10445-11036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0445-1 1 036 bp Feature: gene Location: 12196-14937 bp Feature: domain Description: DUF285 Location: 14668-14881 bp Feature: domain Description: DUF285 Location: 1 4668-1 4881 bp Feature: gene Location: 15137-15334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DUF285 (pfam03382)

Seq: RSFA01000002.1 (120533 bp)
Overview 1 RT 1: 37368-42469 bp 2 RT 2: 55896-65989 bp Neighborhood of RT #1 [37368, 42483] AraC_E_bind RVT-UG2 PLN02942 Neighborhood of RT #2 [55896, 66156] F420_CPS_4043 bcp RVT_N RVT-GII GIIM NERD STKc_CAMK STKc_CAMK KOG1802 KOG1802 Feature: gene Location: 37368-37817 bp Feature: domain Description: AraC_E_bind Location: 37377-37812 bp Feature: domain Description: AraC_E_bind Location: 37377-37812 bp Feature: gene Location: 38229-39059 bp Feature: gene Location: 39204-40487 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 39405-40188 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 39405-40188 bp Feature: gene Location: 40606-40743 bp Feature: gene Location: 41044-42483 bp Feature: domain Description: PLN02942 Location: 41050-42469 bp Feature: domain Description: PLN02 942 Location: 41050-42 469 bp Feature: gene Location: 55896-56903 bp Feature: domain Description: F420_CPS_4043 Location: 55902-56895 bp Feature: domain Description: F42 0_CPS_4043 Location: 55902 -56895 bp Feature: gene Location: 56980-57120 bp Feature: domain Description: bcp Location: 56986-57112 bp Feature: domain Description: bcp Location: 56986-57112 bp Feature: gene Location: 57498-58970 bp Feature: domain Description: RVT_N Location: 57546-57789 bp Feature: domain Description: RVT_N Location: 57546-57789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57834-58461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57834-58461 bp Feature: domain Description: GIIM Note: maturase Location: 58521-58746 bp Feature: domain Description: GIIM Note: maturase Location: 5852 1-58746 bp Feature: gene Location: 59604-61112 bp Feature: gene Location: 61105-66156 bp Feature: domain Description: NERD Location: 61204-61540 bp Feature: domain Description: NERD Location: 612 04-61540 bp Feature: domain Description: STKc_CAMK Location: 62068-62440 bp Feature: domain Description: STKc_CAMK Location: 62 068-62 440 bp Feature: domain Description: STKc_CAMK Location: 62902-63145 bp Feature: domain Description: STKc_CAMK Location: 62 902 -63145 bp Feature: domain Description: KOG1802 Location: 64156-64516 bp Feature: domain Description: KOG1802 Location: 64156-64516 bp Feature: domain Description: KOG1802 Location: 65137-65989 bp Feature: domain Description: KOG1802 Location: 65137-65989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_E_bind (smart00871), RVT-UG2, PLN02942 (dihydropyrimidinase), F420_CPS_4043 (TIGR03842), bcp (PRK09437), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NERD (pfam08378), STKc_CAMK (cd05117)
KOG1802 (KOG1802, RNA helicase nonsense mRNA reducing factor (pNORF1) )