myRT

myRT report for GCA_003939205.1_ASM393920v1

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Seq: RHVZ01000039.1 (24841 bp)
Overview 1 RT 1: 1829-7109 bp Neighborhood of RT #1 [1829, 7801] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 1829-3034 bp Feature: domain Description: Glucosaminidase Location: 2105-2501 bp Feature: domain Description: Glucosaminidase Location: 21 05-2501 bp Feature: domain Description: Peptidase_M23 Location: 2678-2915 bp Feature: domain Description: Peptidase_M23 Location: 2678-291 5 bp Feature: gene Location: 3034-3354 bp Feature: gene Location: 3542-5419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3857-4595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3857-4595 bp Feature: domain Description: HNHc Note: nucleases Location: 5153-5306 bp Feature: domain Description: HNHc Note: nucleases Location: 51 53-5306 bp Feature: gene Location: 5606-5839 bp Feature: gene Location: 6107-7801 bp Feature: domain Description: VirB4 Location: 6422-7109 bp Feature: domain Description: VirB4 Location: 6422-71 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: RHVZ01000124.1 (2761 bp)
Overview 1 RT 1: 721-2512 bp Neighborhood of RT #1 [721, 2631] RVT-GII HNHc Feature: gene Location: 721-2631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2 347-2 512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: RHVZ01000115.1 (3419 bp)
Overview 1 RT 1: 61-3320 bp Neighborhood of RT #1 [61, 3352] RVT-AbiP2 HsdM Feature: gene Location: 61-1536 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 409-874 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 409-874 bp Feature: gene Location: 1874-3352 bp Feature: domain Description: HsdM Location: 1895-3320 bp Feature: domain Description: HsdM Location: 1895-3 3 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: RHVZ01000005.1 (98654 bp)
Overview 1 RT 1: 60622-66734 bp Neighborhood of RT #1 [60622, 66802] HTH_XRE RVT-AbiP2 COG2865 INT_ICEBs1_C_like Feature: gene Location: 60622-61395 bp Feature: gene Location: 61509-61745 bp Feature: domain Description: HTH_XRE Location: 61551-61737 bp Feature: domain Description: HTH_XRE Location: 61551-61737 bp Feature: gene Location: 61917-63413 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 62325-62781 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 62325-62781 bp Feature: gene Location: 63559-65007 bp Feature: domain Description: COG2865 Location: 63565-64963 bp Feature: domain Description: COG2865 Location: 63565-64 963 bp Feature: gene Location: 65576-66802 bp Feature: domain Description: INT_ICEBs1_C_like Location: 66179-66734 bp Feature: domain Description: INT_ICEBs1_C_like Location: 66179-66734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-AbiP2, COG2865 (Predicted transcriptional regulator, contains HTH domain ), INT_ICEBs1_C_like (cd01189)