myRT

myRT report for GCA_003940465.1_ASM394046v1

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Seq: RKJD01000001.1 (5467381 bp)
Overview 1 RT 1: 2234266-2241119 bp Neighborhood of RT #1 [2234266, 2241136] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 2234266-2234931 bp Feature: domain Description: INT_P4_C Location: 2234371-2234929 bp Feature: domain Description: INT_P4_C Location: 2234371 -2234929 bp Feature: gene Location: 2235192-2235632 bp Feature: domain Description: Integrase_1 Location: 2235198-2235414 bp Feature: domain Description: Integrase_1 Location: 22351 98-223541 4 bp Feature: gene Location: 2235689-2237767 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2236097-2236541 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2236097-2236541 bp Feature: gene Location: 2237767-2240376 bp Feature: domain Description: FimD Location: 2237824-2240365 bp Feature: domain Description: FimD Location: 2237824-2240365 bp Feature: gene Location: 2240408-2241136 bp Feature: domain Description: FimC Location: 2240456-2241119 bp Feature: domain Description: FimC Location: 2240456-2241 1 1 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: RKJD01000002.1 (325995 bp)
Overview 1 RT 1: 171813-175810 bp Neighborhood of RT #1 [171813, 175875] APH PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 171813-172616 bp Feature: domain Description: APH Location: 171855-172608 bp Feature: domain Description: APH Location: 171855-172 608 bp Feature: gene Location: 172748-173077 bp Feature: domain Description: PHA02517 Location: 172751-173069 bp Feature: domain Description: PHA02 517 Location: 172 751-173069 bp Feature: gene Location: 173287-174810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173560-174292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173560-1742 92 bp Feature: domain Description: GIIM Note: maturase Location: 174367-174565 bp Feature: domain Description: GIIM Note: maturase Location: 174367-174565 bp Feature: gene Location: 174764-175189 bp Feature: gene Location: 175402-175875 bp Feature: domain Description: PHA02517 Location: 175492-175810 bp Feature: domain Description: PHA02 517 Location: 175492 -175810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT APH (pfam01636), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)