myRT

myRT report for GCA_003944835.1_ASM394483v1

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Seq: RWIV01000001.1 (4518705 bp)
Overview 1 RT 1: 157333-162046 bp 2 RT 2: 1385549-1391860 bp 3 RT 3: 1411636-1422533 bp 4 RT 4: 2472027-2478260 bp 5 RT 5: 3034967-3040301 bp 6 RT 6: 3163124-3167821 bp Neighborhood of RT #1 [157333, 162051] rplM rpsI RVT-GII GIIM spore_cwlD DUF2521 Neighborhood of RT #2 [1385549, 1391860] RVT-CRISPR-like Neighborhood of RT #3 [1411636, 1422544] RVT-GII HNHc DUF2628 TPR RVT-GII HNHc PRK12268 Neighborhood of RT #4 [2472027, 2478361] STAS_anti-anti-sigma_factors GAF PRK13558 PAS_9 PRK13558 SpoIIE HATPase_c_2 RVT-GII GIIM SigM_subfam Neighborhood of RT #5 [3034967, 3040324] PRK13927 PRK00024 RVT-GII Intron_maturas2 HNHc RadC Maf Neighborhood of RT #6 [3163124, 3167838] PRK03124 RVT-GII GIIM PRK07729 KOG3220 Feature: gene Location: 157333-157770 bp Feature: domain Description: rplM Location: 157342-157762 bp Feature: domain Description: rplM Location: 1 57342-1 57762 bp Feature: gene Location: 157790-158182 bp Feature: domain Description: rpsI Location: 157793-158180 bp Feature: domain Description: rpsI Location: 1 57793-1 581 80 bp Feature: gene Location: 158769-160067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159075-159705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 59075-1 59705 bp Feature: domain Description: GIIM Note: maturase Location: 159786-160008 bp Feature: domain Description: GIIM Note: maturase Location: 1 59786-1 60008 bp Feature: gene Location: 160670-161428 bp Feature: domain Description: spore_cwlD Location: 160826-161387 bp Feature: domain Description: spore_cwlD Location: 1 60826-1 61 387 bp Feature: gene Location: 161605-162051 bp Feature: domain Description: DUF2521 Location: 161608-162046 bp Feature: domain Description: DUF2521 Location: 1 61 608-1 62046 bp Feature: gene Location: 1385549-1385899 bp Feature: gene Location: 1386490-1386648 bp Feature: gene Location: 1388333-1388893 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1388540-1388855 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 388540-1 388855 bp Feature: gene Location: 1389169-1390578 bp Feature: gene Location: 1390559-1391860 bp Feature: gene Location: 1411636-1412148 bp Feature: gene Location: 1412226-1412624 bp Feature: gene Location: 1413391-1415154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1413649-1414348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 3649-1 41 4348 bp Feature: domain Description: HNHc Note: nucleases Location: 1414903-1415041 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 4903-1 41 5041 bp Feature: gene Location: 1415207-1415344 bp Feature: gene Location: 1415879-1416634 bp Feature: domain Description: DUF2628 Location: 1415954-1416209 bp Feature: domain Description: DUF2628 Location: 1 41 5954-1 41 6209 bp Feature: domain Description: TPR Location: 1416395-1416599 bp Feature: domain Description: TPR Location: 1 41 6395-1 41 6599 bp Feature: gene Location: 1416920-1417489 bp Feature: gene Location: 1417718-1417897 bp Feature: gene Location: 1418327-1420090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1418585-1419284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 8585-1 41 9284 bp Feature: domain Description: HNHc Note: nucleases Location: 1419839-1419977 bp Feature: domain Description: HNHc Note: nucleases Location: 1 41 9839-1 41 9977 bp Feature: gene Location: 1420490-1420720 bp Feature: gene Location: 1420910-1422544 bp Feature: domain Description: PRK12268 Location: 1420916-1422533 bp Feature: domain Description: PRK1 2268 Location: 1 42091 6-1 422533 bp Feature: gene Location: 2472027-2472332 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 2472039-2472327 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 2472039-2472327 bp Feature: gene Location: 2472319-2475012 bp Feature: domain Description: GAF Location: 2472403-2472793 bp Feature: domain Description: GAF Location: 2472403-2472793 bp Feature: domain Description: PRK13558 Location: 2472808-2473228 bp Feature: domain Description: PRK1 3558 Location: 2472808-2473228 bp Feature: domain Description: PAS_9 Location: 2473246-2473546 bp Feature: domain Description: PAS_9 Location: 2473246-2473546 bp Feature: domain Description: PRK13558 Location: 2473630-2473942 bp Feature: domain Description: PRK1 3558 Location: 2473630-2473942 bp Feature: domain Description: SpoIIE Location: 2474074-2474518 bp Feature: domain Description: SpoIIE Location: 2474074-247451 8 bp Feature: domain Description: HATPase_c_2 Location: 2474692-2474980 bp Feature: domain Description: HATPase_c_2 Location: 2474692-2474980 bp Feature: gene Location: 2475379-2476677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475685-2476315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475685-247631 5 bp Feature: domain Description: GIIM Note: maturase Location: 2476396-2476618 bp Feature: domain Description: GIIM Note: maturase Location: 2476396-247661 8 bp Feature: gene Location: 2477256-2478011 bp Feature: gene Location: 2478095-2478361 bp Feature: domain Description: SigM_subfam Location: 2478119-2478260 bp Feature: domain Description: SigM_subfam Location: 24781 1 9-2478260 bp Feature: gene Location: 3034967-3036019 bp Feature: domain Description: PRK13927 Location: 3035009-3036002 bp Feature: domain Description: PRK1 3927 Location: 3035009-3036002 bp Feature: gene Location: 3036096-3036287 bp Feature: domain Description: PRK00024 Location: 3036102-3036282 bp Feature: domain Description: PRK00024 Location: 30361 02-3036282 bp Feature: gene Location: 3036404-3038215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3036668-3037499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3036668-3037499 bp Feature: domain Description: Intron_maturas2 Location: 3037577-3037955 bp Feature: domain Description: Intron_maturas2 Location: 3037577-3037955 bp Feature: domain Description: HNHc Note: nucleases Location: 3038012-3038189 bp Feature: domain Description: HNHc Note: nucleases Location: 303801 2-30381 89 bp Feature: gene Location: 3038773-3039288 bp Feature: domain Description: RadC Location: 3038815-3039283 bp Feature: domain Description: RadC Location: 303881 5-3039283 bp Feature: gene Location: 3039698-3040324 bp Feature: domain Description: Maf Location: 3039755-3040301 bp Feature: domain Description: Maf Location: 3039755-3040301 bp Feature: gene Location: 3163124-3163501 bp Feature: domain Description: PRK03124 Location: 3163127-3163493 bp Feature: domain Description: PRK031 24 Location: 31 631 27-31 63493 bp Feature: gene Location: 3163933-3164094 bp Feature: gene Location: 3164191-3165489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3164497-3165127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 64497-31 651 27 bp Feature: domain Description: GIIM Note: maturase Location: 3165208-3165430 bp Feature: domain Description: GIIM Note: maturase Location: 31 65208-31 65430 bp Feature: gene Location: 3166085-3167116 bp Feature: domain Description: PRK07729 Location: 3166088-3167105 bp Feature: domain Description: PRK07729 Location: 31 66088-31 671 05 bp Feature: gene Location: 3167236-3167838 bp Feature: domain Description: KOG3220 Location: 3167245-3167821 bp Feature: domain Description: KOG3220 Location: 31 67245-31 67821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT-GII, GIIM (pfam08388), spore_cwlD (TIGR02883), DUF2521 (pfam10730), RVT-CRISPR, HNHc (smart00507), DUF2628 (pfam10947), TPR (smart00028)
PRK12268 (methionyl-tRNA synthetase; Reviewed), STAS_anti-anti-sigma_factors (cd07043), GAF (smart00065), PRK13558 (bacterio-opsin activator; Provisional), PAS_9 (pfam13426), SpoIIE (pfam07228), HATPase_c_2 (pfam13581), SigM_subfam (TIGR02950), PRK13927 (rod shape-determining protein MreB; Provisional), PRK00024 (DNA repair protein RadC)
Intron_maturas2 (pfam01348), RadC (pfam04002), Maf (pfam02545), PRK03124 (S-adenosylmethionine decarboxylase proenzyme; Provisional), PRK07729 (glyceraldehyde-3-phosphate dehydrogenase; Validated), KOG3220 (KOG3220, Similar to bacterial dephospho-CoA kinase )