myRT

myRT report for GCA_003945225.1_ASM394522v1

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Seq: RSDX01000001.1 (3481417 bp)
Overview 1 RT 1: 292018-300573 bp 2 RT 2: 354186-360261 bp 3 RT 3: 378093-383654 bp 4 RT 4: 450094-456139 bp 5 RT 5: 469200-475632 bp 6 RT 6: 964838-971799 bp 7 RT 7: 1138543-1146301 bp 8 RT 8: 1356544-1362783 bp 9 RT 9: 1596754-1602729 bp 10 RT 10: 1677158-1682006 bp 11 RT 11: 1729960-1738932 bp 12 RT 12: 2036394-2041851 bp 13 RT 13: 2138063-2146713 bp 14 RT 14: 2262740-2269213 bp 15 RT 15: 2958359-2962738 bp 16 RT 16: 3275007-3280630 bp Neighborhood of RT #1 [292018, 300573] COG0610 RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #2 [354186, 360266] COG4866 RVT-GII GIIM HflB HptA Neighborhood of RT #3 [378093, 383677] DUF1779 RVT-GII GIIM PRK05571 LMWPAP Neighborhood of RT #4 [450094, 456139] Acetyltransf_10 Alpha_L_fucos RVT-GII GIIM Neighborhood of RT #5 [469200, 475676] dam RVT-GII GIIM secF secD secD Neighborhood of RT #6 [964838, 971799] rplL PBP2_UgpB RVT-GII GIIM DDE_Tnp_1_4 Neighborhood of RT #7 [1138543, 1146327] YciA PRK07084 RVT-GII GIIM dCache_1 COG5001 tgt Neighborhood of RT #8 [1356544, 1362845] DZR DZR RVT-GII GIIM FucU LDH_like_2 Neighborhood of RT #9 [1596754, 1602755] PLPDE_III_AR MazF RVT-GII GIIM PRK00180 YceD Neighborhood of RT #10 [1677158, 1682182] TrmA RVT-GII GIIM HTH_17 Dcm Neighborhood of RT #11 [1729960, 1739549] RVT-GII GIIM HTH_XRE Penicillinase_R Peptidase_M56 RVT-GII GIIM Penicillinase_R Peptidase_M56 Neighborhood of RT #12 [2036394, 2041859] AgrB quorum_AgrD RVT-GII GIIM MFS_MosC_like BcsZ Neighborhood of RT #13 [2138063, 2146715] Hit RVT-GII GIIM KOG0399 GOGAT_sm_gam Neighborhood of RT #14 [2262740, 2269215] DDE_Tnp_IS240 FeS_repair_RIC RVT-GII GIIM DUF1858 Gnd Neighborhood of RT #15 [2958359, 2962738] DUF2935 DUF2935 RVT-GII GIIM Neighborhood of RT #16 [3275007, 3280644] YbiR_permease RVT-GII GIIM DUF3221 hslO Feature: gene Location: 292018-295119 bp Feature: domain Description: COG0610 Location: 292102-295036 bp Feature: domain Description: COG061 0 Location: 2921 02-295036 bp Feature: gene Location: 295142-295774 bp Feature: gene Location: 295913-297325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296249-296873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296249-296873 bp Feature: domain Description: GIIM Note: maturase Location: 296927-297158 bp Feature: domain Description: GIIM Note: maturase Location: 296927-2971 58 bp Feature: gene Location: 297818-299230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298154-298778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981 54-298778 bp Feature: domain Description: GIIM Note: maturase Location: 298832-299063 bp Feature: domain Description: GIIM Note: maturase Location: 298832-299063 bp Feature: gene Location: 299795-300079 bp Feature: gene Location: 300244-300573 bp Feature: gene Location: 354186-355076 bp Feature: domain Description: COG4866 Location: 354255-355074 bp Feature: domain Description: COG4866 Location: 354255-355074 bp Feature: gene Location: 355275-355634 bp Feature: gene Location: 355798-357192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356116-356740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3561 1 6-356740 bp Feature: domain Description: GIIM Note: maturase Location: 356794-357025 bp Feature: domain Description: GIIM Note: maturase Location: 356794-357025 bp Feature: gene Location: 357843-359669 bp Feature: domain Description: HflB Location: 357885-359661 bp Feature: domain Description: HflB Location: 357885-359661 bp Feature: gene Location: 359742-360266 bp Feature: domain Description: HptA Location: 359754-360261 bp Feature: domain Description: HptA Location: 359754-360261 bp Feature: gene Location: 378093-379808 bp Feature: gene Location: 379902-380726 bp Feature: domain Description: DUF1779 Location: 380178-380724 bp Feature: domain Description: DUF1 779 Location: 3801 78-380724 bp Feature: gene Location: 380882-382294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381218-381842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 21 8-381 842 bp Feature: domain Description: GIIM Note: maturase Location: 381896-382127 bp Feature: domain Description: GIIM Note: maturase Location: 381 896-3821 27 bp Feature: gene Location: 382781-383212 bp Feature: domain Description: PRK05571 Location: 382787-383207 bp Feature: domain Description: PRK05571 Location: 382787-383207 bp Feature: gene Location: 383225-383677 bp Feature: domain Description: LMWPAP Location: 383240-383654 bp Feature: domain Description: LMWPAP Location: 383240-383654 bp Feature: gene Location: 450094-451098 bp Feature: domain Description: Acetyltransf_10 Location: 450733-450979 bp Feature: domain Description: Acetyltransf_1 0 Location: 450733-450979 bp Feature: gene Location: 451488-452918 bp Feature: domain Description: Alpha_L_fucos Location: 451500-452775 bp Feature: domain Description: Alpha_L_fucos Location: 451 500-452775 bp Feature: gene Location: 453224-454636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453560-454184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453560-4541 84 bp Feature: domain Description: GIIM Note: maturase Location: 454238-454469 bp Feature: domain Description: GIIM Note: maturase Location: 454238-454469 bp Feature: gene Location: 455506-455823 bp Feature: gene Location: 455924-456139 bp Feature: gene Location: 469200-470480 bp Feature: gene Location: 470467-471321 bp Feature: domain Description: dam Location: 470494-471307 bp Feature: domain Description: dam Location: 470494-471 307 bp Feature: gene Location: 471526-472938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471862-472486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 862-472486 bp Feature: domain Description: GIIM Note: maturase Location: 472540-472771 bp Feature: domain Description: GIIM Note: maturase Location: 472540-472771 bp Feature: gene Location: 473437-474417 bp Feature: domain Description: secF Location: 473455-474352 bp Feature: domain Description: secF Location: 473455-474352 bp Feature: gene Location: 474414-475676 bp Feature: domain Description: secD Location: 474438-474801 bp Feature: domain Description: secD Location: 474438-474801 bp Feature: domain Description: secD Location: 474810-475632 bp Feature: domain Description: secD Location: 47481 0-475632 bp Feature: gene Location: 964838-965215 bp Feature: domain Description: rplL Location: 964853-965213 bp Feature: domain Description: rplL Location: 964853-96521 3 bp Feature: gene Location: 966068-967528 bp Feature: domain Description: PBP2_UgpB Location: 966383-967238 bp Feature: domain Description: PBP2_UgpB Location: 966383-967238 bp Feature: gene Location: 968042-969436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968360-968984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968360-968984 bp Feature: domain Description: GIIM Note: maturase Location: 969041-969269 bp Feature: domain Description: GIIM Note: maturase Location: 969041 -969269 bp Feature: gene Location: 969812-971131 bp Feature: domain Description: DDE_Tnp_1_4 Location: 969839-971120 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 969839-971 1 20 bp Feature: gene Location: 971656-971799 bp Feature: gene Location: 1138543-1139013 bp Feature: domain Description: YciA Location: 1138549-1138990 bp Feature: domain Description: YciA Location: 1 1 38549-1 1 38990 bp Feature: gene Location: 1139299-1140240 bp Feature: domain Description: PRK07084 Location: 1139308-1140226 bp Feature: domain Description: PRK07084 Location: 1 1 39308-1 1 40226 bp Feature: gene Location: 1140793-1142205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1141129-1141753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 41 1 29-1 1 41 753 bp Feature: domain Description: GIIM Note: maturase Location: 1141807-1142038 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 41 807-1 1 42038 bp Feature: gene Location: 1142323-1144803 bp Feature: domain Description: dCache_1 Location: 1142455-1143151 bp Feature: domain Description: dCache_1 Location: 1 1 42455-1 1 431 51 bp Feature: domain Description: COG5001 Location: 1143391-1144741 bp Feature: domain Description: COG5001 Location: 1 1 43391 -1 1 44741 bp Feature: gene Location: 1145083-1146327 bp Feature: domain Description: tgt Location: 1145197-1146301 bp Feature: domain Description: tgt Location: 1 1 451 97-1 1 46301 bp Feature: gene Location: 1356544-1356978 bp Feature: gene Location: 1357035-1359011 bp Feature: domain Description: DZR Location: 1357047-1357101 bp Feature: domain Description: DZR Location: 1 357047-1 3571 01 bp Feature: domain Description: DZR Location: 1357329-1357395 bp Feature: domain Description: DZR Location: 1 357329-1 357395 bp Feature: gene Location: 1359545-1360957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359881-1360505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 359881 -1 360505 bp Feature: domain Description: GIIM Note: maturase Location: 1360559-1360790 bp Feature: domain Description: GIIM Note: maturase Location: 1 360559-1 360790 bp Feature: gene Location: 1361076-1361513 bp Feature: domain Description: FucU Location: 1361079-1361508 bp Feature: domain Description: FucU Location: 1 361 079-1 361 508 bp Feature: gene Location: 1361811-1362845 bp Feature: domain Description: LDH_like_2 Location: 1361820-1362783 bp Feature: domain Description: LDH_like_2 Location: 1 361 820-1 362783 bp Feature: gene Location: 1596754-1597923 bp Feature: domain Description: PLPDE_III_AR Location: 1596802-1597906 bp Feature: domain Description: PLPDE_III_AR Location: 1 596802-1 597906 bp Feature: gene Location: 1598134-1598499 bp Feature: domain Description: MazF Location: 1598137-1598470 bp Feature: domain Description: MazF Location: 1 5981 37-1 598470 bp Feature: gene Location: 1598572-1599966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1598890-1599514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 598890-1 59951 4 bp Feature: domain Description: GIIM Note: maturase Location: 1599571-1599799 bp Feature: domain Description: GIIM Note: maturase Location: 1 599571 -1 599799 bp Feature: gene Location: 1600776-1601978 bp Feature: domain Description: PRK00180 Location: 1600779-1601973 bp Feature: domain Description: PRK001 80 Location: 1 600779-1 601 973 bp Feature: gene Location: 1602228-1602755 bp Feature: domain Description: YceD Location: 1602399-1602729 bp Feature: domain Description: YceD Location: 1 602399-1 602729 bp Feature: gene Location: 1677158-1678537 bp Feature: domain Description: TrmA Location: 1677167-1678511 bp Feature: domain Description: TrmA Location: 1 6771 67-1 67851 1 bp Feature: gene Location: 1678787-1679014 bp Feature: gene Location: 1679030-1680328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1679330-1679969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 679330-1 679969 bp Feature: domain Description: GIIM Note: maturase Location: 1680047-1680269 bp Feature: domain Description: GIIM Note: maturase Location: 1 680047-1 680269 bp Feature: gene Location: 1680799-1680993 bp Feature: domain Description: HTH_17 Location: 1680826-1680976 bp Feature: domain Description: HTH_1 7 Location: 1 680826-1 680976 bp Feature: gene Location: 1681010-1682182 bp Feature: domain Description: Dcm Location: 1681013-1682006 bp Feature: domain Description: Dcm Location: 1 681 01 3-1 682006 bp Feature: gene Location: 1729960-1730175 bp Feature: gene Location: 1730483-1730710 bp Feature: gene Location: 1730726-1732024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1731026-1731665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 731 026-1 731 665 bp Feature: domain Description: GIIM Note: maturase Location: 1731743-1731965 bp Feature: domain Description: GIIM Note: maturase Location: 1 731 743-1 731 965 bp Feature: gene Location: 1732443-1732952 bp Feature: domain Description: HTH_XRE Location: 1732455-1732620 bp Feature: domain Description: HTH_XRE Location: 1 732455-1 732620 bp Feature: gene Location: 1733608-1734003 bp Feature: domain Description: Penicillinase_R Location: 1733629-1733971 bp Feature: domain Description: Penicillinase_R Location: 1 733629-1 733971 bp Feature: gene Location: 1733996-1735297 bp Feature: domain Description: Peptidase_M56 Location: 1734017-1734893 bp Feature: domain Description: Peptidase_M56 Location: 1 73401 7-1 734893 bp Feature: gene Location: 1735430-1735654 bp Feature: gene Location: 1735990-1737402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1736326-1736950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 736326-1 736950 bp Feature: domain Description: GIIM Note: maturase Location: 1737004-1737235 bp Feature: domain Description: GIIM Note: maturase Location: 1 737004-1 737235 bp Feature: gene Location: 1737727-1738089 bp Feature: domain Description: Penicillinase_R Location: 1737748-1738075 bp Feature: domain Description: Penicillinase_R Location: 1 737748-1 738075 bp Feature: gene Location: 1738092-1739549 bp Feature: domain Description: Peptidase_M56 Location: 1738113-1738932 bp Feature: domain Description: Peptidase_M56 Location: 1 7381 1 3-1 738932 bp Feature: gene Location: 2036394-2036999 bp Feature: domain Description: AgrB Location: 2036412-2036943 bp Feature: domain Description: AgrB Location: 203641 2-2036943 bp Feature: gene Location: 2037017-2037214 bp Feature: domain Description: quorum_AgrD Location: 2037095-2037197 bp Feature: domain Description: quorum_AgrD Location: 2037095-20371 97 bp Feature: gene Location: 2037741-2039135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038059-2038683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2038059-2038683 bp Feature: domain Description: GIIM Note: maturase Location: 2038740-2038968 bp Feature: domain Description: GIIM Note: maturase Location: 2038740-2038968 bp Feature: gene Location: 2039356-2040552 bp Feature: domain Description: MFS_MosC_like Location: 2039557-2040514 bp Feature: domain Description: MFS_MosC_like Location: 2039557-204051 4 bp Feature: gene Location: 2040684-2041859 bp Feature: domain Description: BcsZ Location: 2040699-2041851 bp Feature: domain Description: BcsZ Location: 2040699-2041 851 bp Feature: gene Location: 2138063-2138434 bp Feature: domain Description: Hit Location: 2138165-2138390 bp Feature: domain Description: Hit Location: 21 381 65-21 38390 bp Feature: gene Location: 2138564-2138716 bp Feature: gene Location: 2139052-2140464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2139388-2140012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 39388-21 4001 2 bp Feature: domain Description: GIIM Note: maturase Location: 2140066-2140297 bp Feature: domain Description: GIIM Note: maturase Location: 21 40066-21 40297 bp Feature: gene Location: 2140615-2145183 bp Feature: domain Description: KOG0399 Location: 2140651-2145160 bp Feature: domain Description: KOG0399 Location: 21 40651 -21 451 60 bp Feature: gene Location: 2145213-2146715 bp Feature: domain Description: GOGAT_sm_gam Location: 2145222-2146713 bp Feature: domain Description: GOGAT_sm_gam Location: 21 45222-21 4671 3 bp Feature: gene Location: 2262740-2264206 bp Feature: domain Description: DDE_Tnp_IS240 Location: 2263598-2264057 bp Feature: domain Description: DDE_Tnp_IS240 Location: 2263598-2264057 bp Feature: gene Location: 2264383-2265075 bp Feature: domain Description: FeS_repair_RIC Location: 2264413-2265049 bp Feature: domain Description: FeS_repair_RIC Location: 226441 3-2265049 bp Feature: gene Location: 2265387-2266799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265723-2266347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2265723-2266347 bp Feature: domain Description: GIIM Note: maturase Location: 2266401-2266632 bp Feature: domain Description: GIIM Note: maturase Location: 2266401 -2266632 bp Feature: gene Location: 2267435-2267665 bp Feature: domain Description: DUF1858 Location: 2267459-2267624 bp Feature: domain Description: DUF1 858 Location: 2267459-2267624 bp Feature: gene Location: 2267749-2269215 bp Feature: domain Description: Gnd Location: 2267821-2269213 bp Feature: domain Description: Gnd Location: 2267821 -226921 3 bp Feature: gene Location: 2958359-2959282 bp Feature: domain Description: DUF2935 Location: 2958389-2958890 bp Feature: domain Description: DUF2935 Location: 2958389-2958890 bp Feature: domain Description: DUF2935 Location: 2958935-2959268 bp Feature: domain Description: DUF2935 Location: 2958935-2959268 bp Feature: gene Location: 2959890-2960207 bp Feature: gene Location: 2960342-2961754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960678-2961302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960678-2961 302 bp Feature: domain Description: GIIM Note: maturase Location: 2961359-2961587 bp Feature: domain Description: GIIM Note: maturase Location: 2961 359-2961 587 bp Feature: gene Location: 2962090-2962425 bp Feature: gene Location: 2962502-2962738 bp Feature: gene Location: 3275007-3275138 bp Feature: gene Location: 3275386-3276519 bp Feature: domain Description: YbiR_permease Location: 3275425-3276502 bp Feature: domain Description: YbiR_permease Location: 3275425-3276502 bp Feature: gene Location: 3276810-3278204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3277128-3277752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32771 28-3277752 bp Feature: domain Description: GIIM Note: maturase Location: 3277806-3278037 bp Feature: domain Description: GIIM Note: maturase Location: 3277806-3278037 bp Feature: gene Location: 3278765-3279670 bp Feature: domain Description: DUF3221 Location: 3279035-3279245 bp Feature: domain Description: DUF3221 Location: 3279035-3279245 bp Feature: gene Location: 3279763-3280644 bp Feature: domain Description: hslO Location: 3279766-3280630 bp Feature: domain Description: hslO Location: 3279766-3280630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT