myRT

myRT report for GCA_003954465.1_ASM395446v1

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Seq: RWWO01000050.1 (191105 bp)
Overview 1 RT 1: 49466-58307 bp 2 RT 2: 74571-88492 bp Neighborhood of RT #1 [49466, 58315] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74571, 88647] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49466-50140 bp Feature: domain Description: NTP_transferase_like_1 Location: 49472-50111 bp Feature: domain Description: NTP_transferase_like_1 Location: 49472-501 1 1 bp Feature: gene Location: 50137-51153 bp Feature: domain Description: COG3178 Location: 50140-51139 bp Feature: domain Description: COG31 78 Location: 501 40-51 1 39 bp Feature: gene Location: 52426-54138 bp Feature: domain Description: RVT_N Location: 52483-52726 bp Feature: domain Description: RVT_N Location: 52483-52726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52771-53407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52771 -53407 bp Feature: domain Description: YkfC Location: 53617-53767 bp Feature: domain Description: YkfC Location: 5361 7-53767 bp Feature: domain Description: HNH Note: nucleases Location: 53944-54082 bp Feature: domain Description: HNH Note: nucleases Location: 53944-54082 bp Feature: gene Location: 54271-57042 bp Feature: domain Description: LptD Location: 54466-57028 bp Feature: domain Description: LptD Location: 54466-57028 bp Feature: gene Location: 57101-58315 bp Feature: domain Description: PRK10770 Location: 57113-58307 bp Feature: domain Description: PRK1 0770 Location: 571 1 3-58307 bp Feature: gene Location: 74571-76424 bp Feature: domain Description: PRK05658 Location: 74583-76422 bp Feature: domain Description: PRK05658 Location: 74583-76422 bp Feature: gene Location: 76531-80268 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76639-77296 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76639-77296 bp Feature: domain Description: PRK09776 Location: 77509-77980 bp Feature: domain Description: PRK09776 Location: 77509-77980 bp Feature: domain Description: PAS Location: 78037-78562 bp Feature: domain Description: PAS Location: 78037-78562 bp Feature: domain Description: PRK10060 Location: 78574-80218 bp Feature: domain Description: PRK1 0060 Location: 78574-8021 8 bp Feature: gene Location: 81349-83034 bp Feature: domain Description: RVT_N Location: 81406-81646 bp Feature: domain Description: RVT_N Location: 81 406-81 646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81694-82330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 694-82330 bp Feature: domain Description: GIIM Note: maturase Location: 82384-82615 bp Feature: domain Description: GIIM Note: maturase Location: 82384-8261 5 bp Feature: domain Description: HNH Note: nucleases Location: 82867-83005 bp Feature: domain Description: HNH Note: nucleases Location: 82867-83005 bp Feature: gene Location: 83757-84878 bp Feature: domain Description: COG3177 Location: 83775-84867 bp Feature: domain Description: COG31 77 Location: 83775-84867 bp Feature: gene Location: 85921-88647 bp Feature: domain Description: IMPa_N_2 Location: 86128-86710 bp Feature: domain Description: IMPa_N_2 Location: 861 28-8671 0 bp Feature: domain Description: IMPa_helical Location: 86791-87118 bp Feature: domain Description: IMPa_helical Location: 86791 -871 1 8 bp Feature: domain Description: Peptidase_M60 Location: 87562-88492 bp Feature: domain Description: Peptidase_M60 Location: 87562-88492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)

Seq: RWWO01000071.1 (15480 bp)
Overview 1 RT 1: 1825-9137 bp Neighborhood of RT #1 [1825, 10192] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1825-2964 bp Feature: domain Description: AAA_21 Location: 1897-1966 bp Feature: domain Description: AAA_2 1 Location: 1897-1966 bp Feature: domain Description: AAA_21 Location: 2440-2770 bp Feature: domain Description: AAA_2 1 Location: 2 440-2 770 bp Feature: gene Location: 2964-3521 bp Feature: gene Location: 3518-6538 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013-4484 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4013-4484 bp Feature: gene Location: 7208-8317 bp Feature: domain Description: YeeA Location: 7403-8183 bp Feature: domain Description: YeeA Location: 7403-8183 bp Feature: gene Location: 8321-10192 bp Feature: domain Description: DUF262 Location: 8369-9137 bp Feature: domain Description: DUF2 62 Location: 8369-9137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: RWWO01000076.1 (39095 bp)
Overview 1 RT 1: 4641-9020 bp Neighborhood of RT #1 [4641, 9020] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 4641-5468 bp Feature: domain Description: ABC_phnC Location: 4671-5385 bp Feature: domain Description: ABC_phnC Location: 4671-53 85 bp Feature: gene Location: 5811-6452 bp Feature: domain Description: DUF772 Location: 5961-6156 bp Feature: domain Description: DUF772 Location: 5961-6156 bp Feature: gene Location: 6841-8109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7054-7711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7054-7711 bp Feature: domain Description: GIIM Note: maturase Location: 7789-8011 bp Feature: domain Description: GIIM Note: maturase Location: 7789-8011 bp Feature: gene Location: 8259-8657 bp Feature: gene Location: 8841-9020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)