myRT

myRT report for GCA_003954705.1_ASM395470v1

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Seq: RWYI01000066.1 (2462 bp)
Overview 1 RT 1: 3-2215 bp Neighborhood of RT #1 [3, 2215] DDE_Tnp_1_assoc IS285 RVT-GII Feature: gene Location: 3-338 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 24-285 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 24-285 bp Feature: gene Location: 442-1200 bp Feature: domain Description: IS285 Location: 472-1162 bp Feature: domain Description: IS285 Location: 472-1 1 62 bp Feature: gene Location: 1249-1542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1420-1525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 420-1 525 bp Feature: gene Location: 1603-1824 bp Feature: gene Location: 2030-2215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), IS285 (COG3328), RVT-GII

Seq: RWYI01000130.1 (139700 bp)
Overview 1 RT 1: 84729-88611 bp Neighborhood of RT #1 [84729, 88616] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 84729-85445 bp Feature: domain Description: rph Location: 84732-85440 bp Feature: domain Description: rph Location: 84732 -85440 bp Feature: gene Location: 85496-86152 bp Feature: domain Description: pyrE Location: 85514-86147 bp Feature: domain Description: pyrE Location: 85514-86147 bp Feature: gene Location: 86450-87409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86585-87134 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86585-87134 bp Feature: gene Location: 87455-88051 bp Feature: domain Description: slmA Location: 87461-88037 bp Feature: domain Description: slmA Location: 87461-88037 bp Feature: gene Location: 88158-88616 bp Feature: domain Description: dut Location: 88164-88611 bp Feature: domain Description: dut Location: 88164-88611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: RWYI01000040.1 (256981 bp)
Overview 1 RT 1: 2-4672 bp Neighborhood of RT #1 [2, 4674] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-139 bp Feature: gene Location: 143-316 bp Feature: gene Location: 646-2250 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 937-1528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93 7-1528 bp Feature: domain Description: TIR_2 Location: 1855-2143 bp Feature: domain Description: TIR_2 Location: 1855-2143 bp Feature: gene Location: 2608-2868 bp Feature: domain Description: PRK10597 Location: 2611-2851 bp Feature: domain Description: PRK10597 Location: 2611-2851 bp Feature: gene Location: 3088-4674 bp Feature: domain Description: prfC Location: 3106-4672 bp Feature: domain Description: prfC Location: 3 106-4672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: RWYI01000094.1 (301608 bp)
Overview 1 RT 1: 265447-271824 bp Neighborhood of RT #1 [265447, 271844] XdhC PBP2_CrgA_like_5 RVT-UG8 PRK09678 Psu Feature: gene Location: 265447-266403 bp Feature: domain Description: XdhC Location: 265525-266380 bp Feature: domain Description: XdhC Location: 265525-266380 bp Feature: gene Location: 266382-266792 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 266454-266766 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 2664 54 -266766 bp Feature: gene Location: 267334-269352 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 267907-268360 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 267907-268360 bp Feature: gene Location: 271015-271287 bp Feature: domain Description: PRK09678 Location: 271024-271189 bp Feature: domain Description: PRK09678 Location: 271024 -271189 bp Feature: gene Location: 271293-271844 bp Feature: domain Description: Psu Location: 271314-271824 bp Feature: domain Description: Psu Location: 271314 -271824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)