myRT

myRT report for GCA_003966225.1_ASM396622v1

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Seq: RXNU01000033.1 (4517 bp)
Overview 1 RT 1: 2-4282 bp Neighborhood of RT #1 [2, 4413] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_CSD Feature: gene Location: 2-634 bp Feature: gene Location: 631-4413 bp Feature: domain Description: retropepsin_like Location: 955-1213 bp Feature: domain Description: retropepsin_like Location: 955-1 21 3 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1936-2131 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 936-21 31 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2422-2779 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2422-2779 bp Feature: domain Description: Integrase_H2C2 Location: 3022-3190 bp Feature: domain Description: Integrase_H2C2 Location: 3022-31 90 bp Feature: domain Description: rve Location: 3250-3580 bp Feature: domain Description: rve Location: 3250-3580 bp Feature: domain Description: CD_CSD Location: 4135-4282 bp Feature: domain Description: CD_CSD Location: 41 35-4282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-UG26/RVT-UG17/RVT-UG25(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_CSD (cl28914)

Seq: RXNU01000018.1 (97348 bp)
Overview 1 RT 1: 92185-95643 bp Neighborhood of RT #1 [92185, 95643] DUF4250 RVT_N RVT-GII GIIM Feature: gene Location: 92185-92385 bp Feature: domain Description: DUF4250 Location: 92227-92371 bp Feature: domain Description: DUF42 50 Location: 92 2 2 7-92 371 bp Feature: gene Location: 92950-93504 bp Feature: gene Location: 93523-95154 bp Feature: domain Description: RVT_N Location: 93730-93973 bp Feature: domain Description: RVT_N Location: 93730-93973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94018-94645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94018-94645 bp Feature: domain Description: GIIM Note: maturase Location: 94705-94930 bp Feature: domain Description: GIIM Note: maturase Location: 94705-94930 bp Feature: gene Location: 95199-95339 bp Feature: gene Location: 95398-95643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4250 (pfam14056), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: RXNU01000007.1 (274588 bp)
Overview 1 RT 1: 128492-132339 bp Neighborhood of RT #1 [128492, 132339] greB RVT-Retrons Feature: gene Location: 128492-129115 bp Feature: gene Location: 129137-129628 bp Feature: domain Description: greB Location: 129143-129605 bp Feature: domain Description: greB Location: 129143 -129605 bp Feature: gene Location: 129696-131444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129840-130461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129840-13 0461 bp Feature: gene Location: 131471-131620 bp Feature: gene Location: 132184-132339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT greB (TIGR01461), RVT-Retrons

Seq: RXNU01000001.1 (804344 bp)
Overview 1 RT 1: 539229-544036 bp Neighborhood of RT #1 [539229, 544036] RVT_N RVT-GII YkfC PRK14864 Feature: gene Location: 539229-539771 bp Feature: gene Location: 540485-540700 bp Feature: gene Location: 540766-542280 bp Feature: domain Description: RVT_N Location: 540856-541099 bp Feature: domain Description: RVT_N Location: 54 0856-54 1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541144-541771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 114 4 -54 1771 bp Feature: domain Description: YkfC Location: 541915-542170 bp Feature: domain Description: YkfC Location: 54 1915-54 2170 bp Feature: gene Location: 542685-543203 bp Feature: domain Description: PRK14864 Location: 542715-542931 bp Feature: domain Description: PRK14 864 Location: 54 2715-54 2931 bp Feature: gene Location: 543215-544036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), PRK14864 (biofilm peroxide resistance protein BsmA)

Seq: RXNU01000005.1 (420709 bp)
Overview 1 RT 1: 410773-418140 bp Neighborhood of RT #1 [410773, 418433] RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM COG5642 SSL2 Feature: gene Location: 410773-411189 bp Feature: gene Location: 411498-411755 bp Feature: gene Location: 412712-414268 bp Feature: domain Description: RVT_N Location: 412844-413087 bp Feature: domain Description: RVT_N Location: 412844-413087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413132-413759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413132-41375 9 bp Feature: domain Description: GIIM Note: maturase Location: 413816-414044 bp Feature: domain Description: GIIM Note: maturase Location: 413816-414044 bp Feature: gene Location: 414395-414598 bp Feature: gene Location: 414664-416205 bp Feature: domain Description: RVT_N Location: 414781-415024 bp Feature: domain Description: RVT_N Location: 414781-415 024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415069-415696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415 069-415 696 bp Feature: domain Description: GIIM Note: maturase Location: 415756-415981 bp Feature: domain Description: GIIM Note: maturase Location: 415 75 6-415 981 bp Feature: gene Location: 416366-416764 bp Feature: domain Description: COG5642 Location: 416582-416759 bp Feature: domain Description: COG5 642 Location: 4165 82-41675 9 bp Feature: gene Location: 417024-418433 bp Feature: domain Description: SSL2 Location: 417030-418140 bp Feature: domain Description: SSL2 Location: 417030-418140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5642 (Uncharacterized conserved protein, DUF2384 family ), SSL2 (COG1061)