myRT

myRT report for GCA_003968015.1_ASM396801v1

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Seq: RXTB01000123.1 (125507 bp)
Overview 1 RT 1: 49439-58310 bp 2 RT 2: 74574-84871 bp Neighborhood of RT #1 [49439, 58318] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74574, 84882] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49439-50113 bp Feature: domain Description: NTP_transferase_like_1 Location: 49445-50084 bp Feature: domain Description: NTP_transferase_like_1 Location: 49445-50084 bp Feature: gene Location: 50110-51126 bp Feature: domain Description: COG3178 Location: 50113-51112 bp Feature: domain Description: COG31 78 Location: 501 1 3-51 1 1 2 bp Feature: gene Location: 52399-54111 bp Feature: domain Description: RVT_N Location: 52456-52699 bp Feature: domain Description: RVT_N Location: 52456-52699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52744-53380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52744-53380 bp Feature: domain Description: YkfC Location: 53587-53740 bp Feature: domain Description: YkfC Location: 53587-53740 bp Feature: domain Description: HNH Note: nucleases Location: 53917-54055 bp Feature: domain Description: HNH Note: nucleases Location: 5391 7-54055 bp Feature: gene Location: 54244-57045 bp Feature: domain Description: LptD Location: 54439-57031 bp Feature: domain Description: LptD Location: 54439-57031 bp Feature: gene Location: 57104-58318 bp Feature: domain Description: PRK10770 Location: 57116-58310 bp Feature: domain Description: PRK1 0770 Location: 571 1 6-5831 0 bp Feature: gene Location: 74574-76427 bp Feature: domain Description: PRK05658 Location: 74586-76425 bp Feature: domain Description: PRK05658 Location: 74586-76425 bp Feature: gene Location: 76534-80271 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76642-77299 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76642-77299 bp Feature: domain Description: PRK09776 Location: 77512-77983 bp Feature: domain Description: PRK09776 Location: 7751 2-77983 bp Feature: domain Description: PAS Location: 78073-78565 bp Feature: domain Description: PAS Location: 78073-78565 bp Feature: domain Description: PRK10060 Location: 78574-80221 bp Feature: domain Description: PRK1 0060 Location: 78574-80221 bp Feature: gene Location: 81352-83037 bp Feature: domain Description: RVT_N Location: 81409-81649 bp Feature: domain Description: RVT_N Location: 81 409-81 649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81697-82333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 697-82333 bp Feature: domain Description: GIIM Note: maturase Location: 82387-82618 bp Feature: domain Description: GIIM Note: maturase Location: 82387-8261 8 bp Feature: domain Description: HNH Note: nucleases Location: 82870-83008 bp Feature: domain Description: HNH Note: nucleases Location: 82870-83008 bp Feature: gene Location: 83365-83502 bp Feature: gene Location: 83761-84882 bp Feature: domain Description: COG3177 Location: 83779-84871 bp Feature: domain Description: COG31 77 Location: 83779-84871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: RXTB01000093.1 (87799 bp)
Overview 1 RT 1: 19532-26419 bp Neighborhood of RT #1 [19532, 26439] IV_pilus_PilQ DEAH_box_HrpB RVT-UG15 PBP2_HisK Feature: gene Location: 19532-20146 bp Feature: domain Description: IV_pilus_PilQ Location: 19922-20132 bp Feature: domain Description: IV_pilus_PilQ Location: 1992 2 -2 0132 bp Feature: gene Location: 20461-22983 bp Feature: domain Description: DEAH_box_HrpB Location: 20473-22978 bp Feature: domain Description: DEAH_box_HrpB Location: 2 0473-2 2 978 bp Feature: gene Location: 23094-24395 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 23199-23613 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2 3199-2 3613 bp Feature: gene Location: 25274-25681 bp Feature: gene Location: 25705-26439 bp Feature: domain Description: PBP2_HisK Location: 25807-26419 bp Feature: domain Description: PBP2 _HisK Location: 2 5807-2 6419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IV_pilus_PilQ (TIGR02515), DEAH_box_HrpB (TIGR01970), RVT-UG15, PBP2_HisK (cd13704)