myRT

myRT report for GCA_003968025.1_ASM396802v1

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Seq: RXTA01000068.1 (119378 bp)
Overview 1 RT 1: 39878-45464 bp Neighborhood of RT #1 [39878, 45464] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 39878-40714 bp Feature: domain Description: HDOD Location: 39881-40709 bp Feature: domain Description: HDOD Location: 39881 -40709 bp Feature: gene Location: 40815-41759 bp Feature: domain Description: YgfZ Location: 40824-41724 bp Feature: domain Description: YgfZ Location: 40824-41 724 bp Feature: gene Location: 43482-44801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43485-44061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43485-44061 bp Feature: domain Description: YkfC Location: 44259-44415 bp Feature: domain Description: YkfC Location: 44259-4441 5 bp Feature: domain Description: HNH Note: nucleases Location: 44598-44736 bp Feature: domain Description: HNH Note: nucleases Location: 44598-44736 bp Feature: gene Location: 44877-45131 bp Feature: domain Description: SdhE Location: 44883-45123 bp Feature: domain Description: SdhE Location: 44883-451 23 bp Feature: gene Location: 45270-45464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: RXTA01000089.1 (111257 bp)
Overview 1 RT 1: 64-2903 bp Neighborhood of RT #1 [64, 2903] RVT-GII GIIM Feature: gene Location: 64-231 bp Feature: gene Location: 724-1992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1672-1894 bp Feature: domain Description: GIIM Note: maturase Location: 1672 -1894 bp Feature: gene Location: 2142-2540 bp Feature: gene Location: 2724-2903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RXTA01000158.1 (35870 bp)
Overview 1 RT 1: 25755-33927 bp Neighborhood of RT #1 [25755, 34121] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25755-27626 bp Feature: domain Description: DUF262 Location: 25803-26571 bp Feature: domain Description: DUF262 Location: 25803 -26571 bp Feature: gene Location: 27630-29411 bp Feature: domain Description: YeeA Location: 28497-29277 bp Feature: domain Description: YeeA Location: 28497-29277 bp Feature: gene Location: 29408-32428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903-30374 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29903 -3 03 74 bp Feature: gene Location: 32425-32982 bp Feature: gene Location: 32982-34121 bp Feature: domain Description: AAA_21 Location: 33054-33123 bp Feature: domain Description: AAA_21 Location: 3 3 054-3 3 123 bp Feature: domain Description: AAA_21 Location: 33597-33927 bp Feature: domain Description: AAA_21 Location: 3 3 597-3 3 927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: RXTA01000020.1 (217901 bp)
Overview 1 RT 1: 49265-58106 bp 2 RT 2: 74370-85040 bp Neighborhood of RT #1 [49265, 58114] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74370, 85105] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49265-49939 bp Feature: domain Description: NTP_transferase_like_1 Location: 49271-49910 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 9271-4 9910 bp Feature: gene Location: 49936-50952 bp Feature: domain Description: COG3178 Location: 49939-50938 bp Feature: domain Description: COG3178 Location: 4 9939-50938 bp Feature: gene Location: 52225-53937 bp Feature: domain Description: RVT_N Location: 52282-52525 bp Feature: domain Description: RVT_N Location: 52282-52525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52570-53206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52570-53206 bp Feature: domain Description: YkfC Location: 53416-53566 bp Feature: domain Description: YkfC Location: 534 16-53566 bp Feature: domain Description: HNH Note: nucleases Location: 53743-53881 bp Feature: domain Description: HNH Note: nucleases Location: 5374 3-53881 bp Feature: gene Location: 54070-56841 bp Feature: domain Description: LptD Location: 54265-56827 bp Feature: domain Description: LptD Location: 54 265-56827 bp Feature: gene Location: 56900-58114 bp Feature: domain Description: PRK10770 Location: 56912-58106 bp Feature: domain Description: PRK10770 Location: 56912-58106 bp Feature: gene Location: 74370-76223 bp Feature: domain Description: PRK05658 Location: 74382-76221 bp Feature: domain Description: PRK05658 Location: 74 382-76221 bp Feature: gene Location: 76330-80067 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76438-77095 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 764 38-77095 bp Feature: domain Description: PRK09776 Location: 77308-77779 bp Feature: domain Description: PRK09776 Location: 77308-77779 bp Feature: domain Description: PAS Location: 77836-78361 bp Feature: domain Description: PAS Location: 77836-78361 bp Feature: domain Description: PRK10060 Location: 78373-80017 bp Feature: domain Description: PRK10060 Location: 78373-80017 bp Feature: gene Location: 81148-82833 bp Feature: domain Description: RVT_N Location: 81205-81445 bp Feature: domain Description: RVT_N Location: 81205-814 4 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81493-82129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814 93-82129 bp Feature: domain Description: GIIM Note: maturase Location: 82183-82414 bp Feature: domain Description: GIIM Note: maturase Location: 82183-824 14 bp Feature: domain Description: HNH Note: nucleases Location: 82666-82804 bp Feature: domain Description: HNH Note: nucleases Location: 82666-82804 bp Feature: gene Location: 83556-84677 bp Feature: domain Description: COG3177 Location: 83574-84666 bp Feature: domain Description: COG3177 Location: 83574 -84 666 bp Feature: gene Location: 84890-85105 bp Feature: domain Description: NERD Location: 84917-85040 bp Feature: domain Description: NERD Location: 84 917-8504 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)