myRT

myRT report for GCA_003970635.1_ASM397063v1

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Seq: RXWM01000049.1 (91021 bp)
Overview 1 RT 1: 56901-64212 bp Neighborhood of RT #1 [56901, 65267] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 56901-58040 bp Feature: domain Description: AAA_21 Location: 56973-57042 bp Feature: domain Description: AAA_21 Location: 56973-57042 bp Feature: domain Description: AAA_21 Location: 57516-57846 bp Feature: domain Description: AAA_21 Location: 5751 6-57846 bp Feature: gene Location: 58040-58597 bp Feature: gene Location: 58594-61614 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 59089-59560 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 59089-59560 bp Feature: gene Location: 61611-63392 bp Feature: domain Description: YeeA Location: 62478-63258 bp Feature: domain Description: YeeA Location: 62478-63258 bp Feature: gene Location: 63396-65267 bp Feature: domain Description: DUF262 Location: 63444-64212 bp Feature: domain Description: DUF262 Location: 63444-6421 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: RXWM01000182.1 (2439 bp)
Overview 1 RT 1: 1-2310 bp Neighborhood of RT #1 [1, 2357] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-210 bp Feature: gene Location: 241-369 bp Feature: gene Location: 639-2357 bp Feature: domain Description: RVT_N Location: 696-933 bp Feature: domain Description: RVT_N Location: 696-933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984-1635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984-1635 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1920 bp Feature: domain Description: GIIM Note: maturase Location: 1689-192 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2154-2310 bp Feature: domain Description: HNHc Note: nucleases Location: 2 154-2 310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RXWM01000101.1 (8244 bp)
Overview 1 RT 1: 5342-8242 bp Neighborhood of RT #1 [5342, 8242] RVT-GII GIIM Feature: gene Location: 5342-5521 bp Feature: gene Location: 5705-6103 bp Feature: gene Location: 6253-7521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6466-7123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6466-7123 bp Feature: domain Description: GIIM Note: maturase Location: 7201-7423 bp Feature: domain Description: GIIM Note: maturase Location: 7201-7423 bp Feature: gene Location: 7925-8242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RXWM01000045.1 (199798 bp)
Overview 1 RT 1: 114694-125427 bp 2 RT 2: 141685-150505 bp Neighborhood of RT #1 [114694, 125429] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [141685, 150534] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 114694-114909 bp Feature: domain Description: NERD Location: 114721-114844 bp Feature: domain Description: NERD Location: 114 721-114 84 4 bp Feature: gene Location: 115122-116243 bp Feature: domain Description: COG3177 Location: 115140-116232 bp Feature: domain Description: COG3177 Location: 11514 0-116232 bp Feature: gene Location: 116966-118651 bp Feature: domain Description: RVT_N Location: 117023-117263 bp Feature: domain Description: RVT_N Location: 117023-117263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117311-117947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117311-11794 7 bp Feature: domain Description: GIIM Note: maturase Location: 118001-118232 bp Feature: domain Description: GIIM Note: maturase Location: 118001-118232 bp Feature: domain Description: HNH Note: nucleases Location: 118484-118622 bp Feature: domain Description: HNH Note: nucleases Location: 1184 84 -118622 bp Feature: gene Location: 119732-123469 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 119840-120497 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 11984 0-1204 97 bp Feature: domain Description: PRK09776 Location: 120710-121181 bp Feature: domain Description: PRK09776 Location: 120710-121181 bp Feature: domain Description: PAS Location: 121238-121763 bp Feature: domain Description: PAS Location: 121238-121763 bp Feature: domain Description: PRK10060 Location: 121775-123419 bp Feature: domain Description: PRK10060 Location: 121775-1234 19 bp Feature: gene Location: 123576-125429 bp Feature: domain Description: PRK05658 Location: 123588-125427 bp Feature: domain Description: PRK05658 Location: 123588-1254 27 bp Feature: gene Location: 141685-142899 bp Feature: domain Description: PRK10770 Location: 141697-142891 bp Feature: domain Description: PRK10770 Location: 14 1697-14 2891 bp Feature: gene Location: 142958-145729 bp Feature: domain Description: LptD Location: 143153-145715 bp Feature: domain Description: LptD Location: 14 3153-14 5715 bp Feature: gene Location: 145862-147574 bp Feature: domain Description: RVT_N Location: 145919-146162 bp Feature: domain Description: RVT_N Location: 14 5919-14 6162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146207-146843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 6207-14 684 3 bp Feature: domain Description: YkfC Location: 147053-147203 bp Feature: domain Description: YkfC Location: 14 7053-14 7203 bp Feature: domain Description: HNH Note: nucleases Location: 147380-147518 bp Feature: domain Description: HNH Note: nucleases Location: 14 7380-14 7518 bp Feature: gene Location: 148847-149863 bp Feature: domain Description: COG3178 Location: 148850-149849 bp Feature: domain Description: COG3178 Location: 14 8850-14 984 9 bp Feature: gene Location: 149860-150534 bp Feature: domain Description: NTP_transferase_like_1 Location: 149866-150505 bp Feature: domain Description: NTP_transferase_like_1 Location: 14 9866-150505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)