myRT

myRT report for GCA_003973615.1_ASM397361v1

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Seq: QNYJ01000151.1 (4682 bp)
Overview 1 RT 1: 1-3532 bp Neighborhood of RT #1 [1, 4680] L1-EN RVT-GII Feature: gene Location: 1-204 bp Feature: gene Location: 286-426 bp Feature: gene Location: 1246-4680 bp Feature: domain Description: L1-EN Location: 1264-1945 bp Feature: domain Description: L1 -EN Location: 1 264-1 945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881-3532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881 -3532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-GII

Seq: QNYJ01000098.1 (5360 bp)
Overview 1 RT 1: 1-5359 bp Neighborhood of RT #1 [1, 5359] sialate_O-acetylesterase_like2 Exo_endo_phos_2 RVT-UNC Feature: gene Location: 1-1272 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 799-1171 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 799-1171 bp Feature: gene Location: 1333-4227 bp Feature: domain Description: Exo_endo_phos_2 Location: 1693-2020 bp Feature: domain Description: Exo_endo_phos_2 Location: 1693-2 02 0 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2902-3505 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 902 -3505 bp Feature: gene Location: 5192-5359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sialate_O-acetylesterase_like2 (cd01828), Exo_endo_phos_2 (pfam14529), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: QNYJ01000161.1 (3218 bp)
Overview 1 RT 1: 266-2828 bp Neighborhood of RT #1 [266, 3130] RVT-UNC L1-EN Feature: gene Location: 266-2065 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 770-1337 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 770-13 3 7 bp Feature: gene Location: 2135-3130 bp Feature: domain Description: L1-EN Location: 2204-2828 bp Feature: domain Description: L1-EN Location: 2204-2828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-CRISPR/RVT-GII(RVT-UNC), L1-EN (cd09076)

Seq: QNYJ01000024.1 (4668 bp)
Overview 1 RT 1: 534-4099 bp Neighborhood of RT #1 [534, 4113] RVT-DGRs RNase_HI_RT_DIRS1 Phage_int_SAM_1 INT_Cre_C Feature: gene Location: 534-1640 bp Feature: gene Location: 1537-1977 bp Feature: gene Location: 2039-3214 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2168-2393 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2168-2393 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 2768-3119 bp Feature: domain Description: RNase_HI_RT_DIRS1 Location: 2768-3119 bp Feature: gene Location: 3121-4113 bp Feature: domain Description: Phage_int_SAM_1 Location: 3235-3436 bp Feature: domain Description: Phage_int_SAM_1 Location: 3235-34 36 bp Feature: domain Description: INT_Cre_C Location: 3613-4099 bp Feature: domain Description: INT_Cre_C Location: 3613-4 099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, RNase_HI_RT_DIRS1 (cd09275), Phage_int_SAM_1 (pfam02899), INT_Cre_C (cd00799)

Seq: QNYJ01000028.1 (3805 bp)
Overview 1 RT 1: 1-3721 bp Neighborhood of RT #1 [1, 3721] L1-EN RVT-UNC Feature: gene Location: 1-3459 bp Feature: domain Description: L1-EN Location: 94-868 bp Feature: domain Description: L1-EN Location: 94-868 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1759-2410 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 175 9-2410 bp Feature: gene Location: 3491-3721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR/RVT-DGRs(RVT-UNC)

Seq: QNYJ01000113.1 (5261 bp)
Overview 1 RT 1: 563-4873 bp Neighborhood of RT #1 [563, 4873] PTZ00368 retropepsin_like_LTR_1 RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 563-772 bp Feature: gene Location: 949-2349 bp Feature: domain Description: PTZ00368 Location: 1525-1717 bp Feature: domain Description: PTZ0036 8 Location: 1525-1717 bp Feature: domain Description: retropepsin_like_LTR_1 Location: 1846-2095 bp Feature: domain Description: retropepsin_like_LTR_1 Location: 1846 -2095 bp Feature: gene Location: 2358-3827 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2691-2829 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 26 91-2829 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3129-3480 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3129-3480 bp Feature: domain Description: Integrase_H2C2 Location: 3735-3825 bp Feature: domain Description: Integrase_H2C2 Location: 3735-3825 bp Feature: gene Location: 3951-4424 bp Feature: domain Description: rve Location: 3978-4254 bp Feature: domain Description: rve Location: 3978-4254 bp Feature: gene Location: 4445-4873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTZ00368 (universal minicircle sequence binding protein (UMSBP); Provisional), retropepsin_like_LTR_1 (cd05481), RVT-UG3/RVT-UG26/RVT-CRISPR/RVT-UG10(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QNYJ01000010.1 (5429 bp)
Overview 1 RT 1: 113-4885 bp Neighborhood of RT #1 [113, 5190] L1-EN RVT-UNC zf-RVT Feature: gene Location: 113-979 bp Feature: gene Location: 1413-3908 bp Feature: domain Description: L1-EN Location: 1446-2145 bp Feature: domain Description: L1-EN Location: 1446-2145 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3024-3651 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3024-3651 bp Feature: gene Location: 4021-5190 bp Feature: domain Description: zf-RVT Location: 4705-4885 bp Feature: domain Description: zf-RVT Location: 47 05-4885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), zf-RVT (pfam13966)

Seq: QNYJ01000080.1 (4157 bp)
Overview 1 RT 1: 3-3789 bp Neighborhood of RT #1 [3, 3896] XthA RVT-UNC sialate_O-acetylesterase_like2 Feature: gene Location: 3-2219 bp Feature: domain Description: XthA Location: 183-621 bp Feature: domain Description: XthA Location: 18 3-621 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1695-2193 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1695-2193 bp Feature: gene Location: 2232-3896 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 3411-3789 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 3411-378 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XthA (COG0708), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), sialate_O-acetylesterase_like2 (cd01828)

Seq: QNYJ01000175.1 (3617 bp)
Overview 1 RT 1: 333-3616 bp Neighborhood of RT #1 [333, 3616] L1-EN RVT-UNC Feature: gene Location: 333-3404 bp Feature: domain Description: L1-EN Location: 567-1068 bp Feature: domain Description: L1-EN Location: 567-1068 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2073-2706 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2073-2706 bp Feature: gene Location: 3470-3616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: QNYJ01000126.1 (3278 bp)
Overview 1 RT 1: 303-2154 bp Neighborhood of RT #1 [303, 3275] RVT-GII Feature: gene Location: 303-3275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1674-2154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1674-2154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QNYJ01000165.1 (3508 bp)
Overview 1 RT 1: 3-3444 bp Neighborhood of RT #1 [3, 3506] R1-I-EN RVT-GII Rnase_HI_RT_non_LTR zf-RVT Feature: gene Location: 3-3506 bp Feature: domain Description: R1-I-EN Location: 93-486 bp Feature: domain Description: R1-I-EN Location: 93-486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350-1962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350-1962 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 2730-3114 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 2730-311 4 bp Feature: domain Description: zf-RVT Location: 3294-3444 bp Feature: domain Description: zf-RVT Location: 3294-3444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-GII, Rnase_HI_RT_non_LTR (cd09276), zf-RVT (pfam13966)

Seq: QNYJ01000121.1 (6929 bp)
Overview 1 RT 1: 216-6928 bp Neighborhood of RT #1 [216, 6928] RVT-DGRs RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 216-1520 bp Feature: gene Location: 1901-6142 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3101-3407 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3101-3407 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3770-4133 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3770-4133 bp Feature: domain Description: Integrase_H2C2 Location: 4529-4691 bp Feature: domain Description: Integrase_H2C2 Location: 4529-4691 bp Feature: domain Description: rve Location: 4739-5069 bp Feature: domain Description: rve Location: 4739-5069 bp Feature: gene Location: 6791-6928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QNYJ01000092.1 (2861 bp)
Overview 1 RT 1: 2-2858 bp Neighborhood of RT #1 [2, 2858] Exo_endo_phos_2 RVT-UNC Feature: gene Location: 2-151 bp Feature: gene Location: 329-1144 bp Feature: domain Description: Exo_endo_phos_2 Location: 356-590 bp Feature: domain Description: Exo_endo_phos_2 Location: 356-590 bp Feature: gene Location: 1231-2550 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1441-1945 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1441-1945 bp Feature: gene Location: 2691-2858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Exo_endo_phos_2 (pfam14529), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC)

Seq: QNYJ01000049.1 (4537 bp)
Overview 1 RT 1: 608-3600 bp Neighborhood of RT #1 [608, 3980] zf-RVT RVT-GII L1-EN Feature: gene Location: 608-1459 bp Feature: domain Description: zf-RVT Location: 953-1148 bp Feature: domain Description: zf-RVT Location: 953-114 8 bp Feature: gene Location: 1586-2887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1667-2327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1667-2327 bp Feature: gene Location: 2936-3301 bp Feature: gene Location: 3318-3980 bp Feature: domain Description: L1-EN Location: 3372-3600 bp Feature: domain Description: L1-EN Location: 3372-3600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-RVT (pfam13966), RVT-GII, L1-EN (cd09076)

Seq: QNYJ01000077.1 (3129 bp)
Overview 1 RT 1: 179-2711 bp Neighborhood of RT #1 [179, 2827] RVT-UNC sialate_O-acetylesterase_like2 Feature: gene Location: 179-1867 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1292-1799 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1292-1799 bp Feature: gene Location: 2105-2419 bp Feature: gene Location: 2441-2827 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 2465-2711 bp Feature: domain Description: sialate_O-acetylesterase_like2 Location: 2465-2711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2/RVT-GII/RVT-CRISPR(RVT-UNC), sialate_O-acetylesterase_like2 (cd01828)

Seq: QNYJ01000144.1 (3358 bp)
Overview 1 RT 1: 3-3042 bp Neighborhood of RT #1 [3, 3042] L1-EN RVT-GII Feature: gene Location: 3-2342 bp Feature: domain Description: L1-EN Location: 15-696 bp Feature: domain Description: L1-EN Location: 15-696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584-2211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584-2211 bp Feature: gene Location: 2761-3042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-GII

Seq: QNYJ01000006.1 (6269 bp)
Overview 1 RT 1: 412-5629 bp Neighborhood of RT #1 [412, 5655] DUF1759 DUF1758 RVT-UG11 Peptidase_A17 Integrase_H2C2 rve DUF5641 Feature: gene Location: 412-5655 bp Feature: domain Description: DUF1759 Location: 973-1390 bp Feature: domain Description: DUF17 59 Location: 973-1390 bp Feature: domain Description: DUF1758 Location: 1870-2317 bp Feature: domain Description: DUF17 58 Location: 1870-2317 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2986-3235 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2986-3235 bp Feature: domain Description: Peptidase_A17 Location: 3415-3898 bp Feature: domain Description: Peptidase_A17 Location: 3415-3898 bp Feature: domain Description: Integrase_H2C2 Location: 4549-4693 bp Feature: domain Description: Integrase_H2C2 Location: 4549-4693 bp Feature: domain Description: rve Location: 4795-5134 bp Feature: domain Description: rve Location: 4795-5134 bp Feature: domain Description: DUF5641 Location: 5356-5629 bp Feature: domain Description: DUF5641 Location: 5356-5629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1759 (pfam03564), DUF1758 (pfam05585), RVT-UG11, Peptidase_A17 (pfam05380), Integrase_H2C2 (pfam17921), rve (pfam00665), DUF5641 (pfam18701)

Seq: QNYJ01000025.1 (6395 bp)
Overview 1 RT 1: 289-4344 bp Neighborhood of RT #1 [289, 5636] retropepsin_like RVT-DGRs RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 289-1134 bp Feature: gene Location: 1188-5636 bp Feature: domain Description: retropepsin_like Location: 1245-1509 bp Feature: domain Description: retropepsin_like Location: 1245-1509 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2595-2802 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2595-2802 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3114-3471 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3114-3471 bp Feature: domain Description: Integrase_H2C2 Location: 3831-3999 bp Feature: domain Description: Integrase_H2C2 Location: 3831-3999 bp Feature: domain Description: rve Location: 4038-4344 bp Feature: domain Description: rve Location: 4038-4344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-DGRs, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: QNYJ01000004.1 (3191 bp)
Overview 1 RT 1: 60-2526 bp Neighborhood of RT #1 [60, 2852] RVT-UNC zf-RVT Feature: gene Location: 60-401 bp Feature: gene Location: 585-1532 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 702-1341 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 702-1341 bp Feature: gene Location: 1469-2188 bp Feature: gene Location: 2157-2852 bp Feature: domain Description: zf-RVT Location: 2361-2526 bp Feature: domain Description: zf-RVT Location: 2361-2526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27/RVT-GII/RVT-CRISPR(RVT-UNC), zf-RVT (pfam13966)

Seq: QNYJ01000044.1 (3333 bp)
Overview 1 RT 1: 3-2844 bp Neighborhood of RT #1 [3, 2844] RVT-UG28 zf-RVT Feature: gene Location: 3-1754 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 45-183 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 45-183 bp Feature: domain Description: zf-RVT Location: 1245-1437 bp Feature: domain Description: zf-RVT Location: 1245-1437 bp Feature: gene Location: 2477-2611 bp Feature: gene Location: 2659-2844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, zf-RVT (pfam13966)

Seq: QNYJ01000046.1 (3170 bp)
Overview 1 RT 1: 3-2791 bp Neighborhood of RT #1 [3, 2791] RVT-CRISPR-like GIY-YIG_PLEs Feature: gene Location: 3-2249 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 825-1218 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 825-121 8 bp Feature: domain Description: GIY-YIG_PLEs Location: 1992-2223 bp Feature: domain Description: GIY-YIG_PLEs Location: 1992-2223 bp Feature: gene Location: 2256-2516 bp Feature: gene Location: 2657-2791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIY-YIG_PLEs (cd10442)